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(1)
Title
:
THREE-DIMENSIONAL MODEL OF THE SACCHAROMYCES CEREVISIAE SUCCINATE DEHYDROGENASE
Authors
:
K. S. Oyedotun, B. D. Lemire
Date
:
17 Mar 03 (Deposition) - 09 Mar 04 (Release) - 09 Mar 04 (Revision)
Method
:
THEORETICAL MODEL
Resolution
:
NOT APPLICABLE
Chains
:
Theor. Model : A,B,C,D
Keywords
:
Oxidoreductase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
K. S. Oyedotun, B. D. Lemire
The Quaternary Structure Of The Saccharomyces Cerevisiae Succinate Dehydrogenase:Homology Modeling, Cofactor Docking, And Molecular Dynamics Simulation Studies
J. Biol. Chem. V. 279 9424 2004
(for further references see the
PDB file header
)
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Hetero Components
(0, 0)
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Sites
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SAPs(SNPs)/Variants
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PROSITE Patterns/Profiles
(7, 7)
Info
All PROSITE Patterns/Profiles
1: 2FE2S_FER_2 (B:16-107)
2: SDH_CYT_1 (C:25-49)
3: 2FE2S_FER_1 (B:67-75)
4: FRD_SDH_FAD_BINDING (A:60-69)
5: SDH_CYT_2 (C:106-119)
6: 4FE4S_FER_2 (B:149-179)
7: 4FE4S_FER_1 (B:159-170)
;
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PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
2FE2S_FER_2
PS51085
2Fe-2S ferredoxin-type iron-sulfur binding domain profile.
SDHB_YEAST
36-127
1
B:16-107
2
SDH_CYT_1
PS01000
Succinate dehydrogenase cytochrome b subunit signature 1.
SDH3_YEAST
75-99
1
C:25-49
3
2FE2S_FER_1
PS00197
2Fe-2S ferredoxin-type iron-sulfur binding region signature.
SDHB_YEAST
87-95
1
B:67-75
4
FRD_SDH_FAD_BINDING
PS00504
Fumarate reductase / succinate dehydrogenase FAD-binding site.
SDHA_YEAST
88-97
1
A:60-69
5
SDH_CYT_2
PS01001
Succinate dehydrogenase cytochrome b subunit signature 2.
SDH3_YEAST
156-169
1
C:106-119
6
4FE4S_FER_2
PS51379
4Fe-4S ferredoxin-type iron-sulfur binding domain profile.
SDHB_YEAST
169-199
1
B:149-179
7
4FE4S_FER_1
PS00198
4Fe-4S ferredoxin-type iron-sulfur binding region signature.
SDHB_YEAST
179-190
1
B:159-170
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Exons
(4, 4)
Info
All Exons
Exon 1.1 (D:1-150)
Exon 2.1 (C:1-148)
Exon 3.1 (A:1-612)
Exon 4.1 (B:1-246)
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1: Boundary -/1.1
2: Boundary 1.1/-
3: Boundary -/2.1
4: Boundary 2.1/-
5: Boundary -/3.1
6: Boundary 3.1/-
7: Boundary -/4.1
8: Boundary 4.1/-
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Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1
YDR178W
1
YDR178W.1
IV:817948-818493
546
DHSD_YEAST
1-181
181
1
D:1-150
150
2.1
YKL141W
1
YKL141W.1
XI:179672-180268
597
SDH3_YEAST
1-198
198
1
C:1-148
148
3.1
YKL148C
1
YKL148C.1
XI:171134-169212
1923
SDHA_YEAST
1-640
640
1
A:1-612
612
4.1
YLL041C
1
YLL041C.1
XII:53930-53130
801
SDHB_YEAST
1-266
266
1
B:1-246
246
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