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Jmol._Canvas2D (Jmol) "jmolJena3D"[x] loadClass core.package loadClass java.lang.String loadClass core.package JSmol exec jmolJena3D start applet null Jmol JavaScript applet jmolJena3D__590425408295628__ initializing Jmol getValue debug null Jmol getValue logLevel null Jmol getValue allowjavascript true AppletRegistry.checkIn(jmolJena3D__590425408295628__) nographics false nographics false headless false vwrOptions: { "name":"jmolJena3D","applet":true,"documentBase":"http://jenalib.leibniz-fli.de/cgi-bin/3d_mapping.pl?CODE=1oru&MODE=asymmetric&VIEW=site","platform":"J.awtjs2d.Platform","messagecallback":"_jmolMessageCallback","allowjavascript":true,"fullName":"jmolJena3D__590425408295628__","codePath":"http://jenalib.leibniz-fli.de/ImgLibPDB/jmol/jmol-14.4.0_2015.10.17/jsmol/j2s/","display":"jmolJena3D_canvas2d","signedApplet":"true","appletReadyCallback":"Jmol._readyCallback","statusListener":"[J.appletjs.Jmol object]","syncId":"590425408295628","bgcolor":"black" } setting document base to "http://jenalib.leibniz-fli.de/cgi-bin/3d_mapping.pl?CODE=1oru&MODE=asymmetric&VIEW=site" (C) 2015 Jmol Development Jmol Version: 14.4.0_2015.10.14 2015-10-17 18:11 java.vendor: Java2Script (HTML5) java.version: 2015-10-17 18:21:06 (JSmol/j2s) os.name: Mozilla/5.0 AppleWebKit/537.36 (KHTML, like Gecko; compatible; ClaudeBot/1.0; +claudebot@anthropic.com) Access: ALL memory: 0.0/0.0 processors available: 1 useCommandThread: false appletId:jmolJena3D (signed) loadClass JS.ScriptManager Jmol getValue emulate null defaults = "Jmol" Jmol getValue boxbgcolor null Jmol getValue bgcolor black backgroundColor = "black" Jmol getValue ANIMFRAMECallback null Jmol getValue APPLETREADYCallback Jmol._readyCallback APPLETREADYCallback = "Jmol._readyCallback" callback set for APPLETREADYCallback Jmol._readyCallback APPLETREADY Jmol getValue ATOMMOVEDCallback null Jmol getValue CLICKCallback null Jmol getValue DRAGDROPCallback null Jmol getValue ECHOCallback null Jmol getValue ERRORCallback null Jmol getValue EVALCallback null Jmol getValue HOVERCallback null Jmol getValue IMAGECallback null Jmol getValue LOADSTRUCTCallback null Jmol getValue MEASURECallback null Jmol getValue MESSAGECallback _jmolMessageCallback MESSAGECallback = "_jmolMessageCallback" callback set for MESSAGECallback _jmolMessageCallback MESSAGE Jmol getValue MINIMIZATIONCallback null Jmol getValue SERVICECallback null Jmol getValue PICKCallback null Jmol getValue RESIZECallback null Jmol getValue SCRIPTCallback null Jmol getValue SYNCCallback null Jmol getValue STRUCTUREMODIFIEDCallback null Jmol getValue doTranslate null language=en_US Jmol getValue doTranslate null Note -- Presence of message callback disables disable translation; to enable message translation use jmolSetTranslation(true) prior to jmolApplet() Note -- language translation disabled Jmol getValue popupMenu null Jmol getValue script null Jmol getValue loadInline null Jmol getValue load null Jmol applet jmolJena3D__590425408295628__ ready script 1 started loadClass J.shape.Echo Please wait... loadClass JV.PropertyManager ribbonBorder = true defaultColorScheme = "rasmol" chainCaseSensitive = true FileManager opening url http://jenalib.leibniz-fli.de/ImgLibPDB/tmp/1ORU_snp.pdb.asymmetric.site-209047.jmz loadClass JM.Resolver Loading file, please wait... FileManager.getAtomSetCollectionFromFile(http://jenalib.leibniz-fli.de/cgi-bin/idb_send.pl?CODE=1ORU&MODE=.bin-compressed-asymmetric) FileManager opening url http://jenalib.leibniz-fli.de/cgi-bin/idb_send.pl?CODE=1ORU&MODE=.bin-compressed-asymmetric The Resolver thinks Pdb STRUCTURAL GENOMICS, UNKNOWN FUNCTION 15-MAR-03 1ORU CRYSTAL STRUCTURE OF APC1665, YUAD PROTEIN FROM BACILLUS SUBTILIS found biomolecule 1: A, B biomolecule 1: number of transforms: 1 Setting space group name to P 21 21 21 Time for openFile(http://jenalib.leibniz-fli.de/cgi-bin/idb_send.pl?CODE=1ORU&MODE=.bin-compressed-asymmetric): 429 ms reading 3312 atoms ModelSet: haveSymmetry:false haveUnitcells:false haveFractionalCoord:false 1 model in this collection. Use getProperty "modelInfo" or getProperty "auxiliaryInfo" to inspect them. model 1.1 alternative locations: AB Default Van der Waals type for model set to Jmol 3312 atoms created ModelSet: autobonding; use autobond=false to not generate bonds automatically STRUCTURAL GENOMICS, UNKNOWN FUNCTION 15-MAR-03 1ORU CRYSTAL STRUCTURE OF APC1665, YUAD PROTEIN FROM BACILLUS SUBTILIS found biomolecule 1: A, B loadClass JS.MathExt Preparing view, please wait... |
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