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Asym. Unit
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Asym.Unit (248 KB)
Biol.Unit 1 (124 KB)
Biol.Unit 2 (123 KB)
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(1)
Title
:
CRYSTAL STRUCTURES OF GLUTARYL 7-AMINOCEPHALOSPORANIC ACID ACYLASE: INSIGHT INTO AUTOPROTEOLYTIC ACTIVATION
Authors
:
J. K. Kim, I. S. Yang, S. Rhee, Z. Dauter, Y. S. Lee, S. S. Park, K. H. Kim
Date
:
11 Mar 03 (Deposition) - 11 Mar 04 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.00
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A,B (1x)
Biol. Unit 2: C,D (1x)
Keywords
:
Glutaryl 7-Aminocephalosporanic Acid, N-Terminal Nucleophile (Ntn) Hydrolases, Glutaryl 7- Aminocephalosporanic Acid Acylase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
J. K. Kim, I. S. Yang, S. Rhee, Z. Dauter, Y. S. Lee, S. S. Park, K. H. Kim
Crystal Structures Of Glutaryl 7-Aminocephalosporanic Acid Acylase: Insight Into Autoproteolytic Activation
Biochemistry V. 42 4084 2003
(for further references see the
PDB file header
)
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Hetero Components
(2, 26)
Info
All Hetero Components
1a: 1,2-ETHANEDIOL (EDOa)
1b: 1,2-ETHANEDIOL (EDOb)
2a: SELENOMETHIONINE (MSEa)
2b: SELENOMETHIONINE (MSEb)
2c: SELENOMETHIONINE (MSEc)
2d: SELENOMETHIONINE (MSEd)
2e: SELENOMETHIONINE (MSEe)
2f: SELENOMETHIONINE (MSEf)
2g: SELENOMETHIONINE (MSEg)
2h: SELENOMETHIONINE (MSEh)
2i: SELENOMETHIONINE (MSEi)
2j: SELENOMETHIONINE (MSEj)
2k: SELENOMETHIONINE (MSEk)
2l: SELENOMETHIONINE (MSEl)
2m: SELENOMETHIONINE (MSEm)
2n: SELENOMETHIONINE (MSEn)
2o: SELENOMETHIONINE (MSEo)
2p: SELENOMETHIONINE (MSEp)
2q: SELENOMETHIONINE (MSEq)
2r: SELENOMETHIONINE (MSEr)
2s: SELENOMETHIONINE (MSEs)
2t: SELENOMETHIONINE (MSEt)
2u: SELENOMETHIONINE (MSEu)
2v: SELENOMETHIONINE (MSEv)
2w: SELENOMETHIONINE (MSEw)
2x: SELENOMETHIONINE (MSEx)
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Label:
No.
Name
Count
Type
Full Name
1
EDO
2
Ligand/Ion
1,2-ETHANEDIOL
2
MSE
24
Mod. Amino Acid
SELENOMETHIONINE
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Sites
(2, 2)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
HOH A:318 , SER B:1 , PRO B:22 , TYR B:33 , ARG B:57 , PHE B:58 , ASN B:68 , THR B:69 , VAL B:70 , PHE B:177 , HOH B:2389
BINDING SITE FOR RESIDUE EDO B 2001
2
AC2
SOFTWARE
SER D:1 , ARG D:57 , PHE D:58 , ASN D:68 , THR D:69 , PHE D:177 , HOH D:2458
BINDING SITE FOR RESIDUE EDO D 2002
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SAPs(SNPs)/Variants
(0, 0)
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(mutated residues are not available)
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PROSITE Patterns/Profiles
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Exons
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Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(1, 2)
Info
All SCOP Domains
1a: SCOP_d1or0_1 (A:,B:)
1b: SCOP_d1or0_2 (C:,D:)
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)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
Ntn hydrolase-like
(356)
Superfamily
:
N-terminal nucleophile aminohydrolases (Ntn hydrolases)
(352)
Family
:
Penicillin acylase, catalytic domain
(37)
Protein domain
:
Cephalosporin acylase
(9)
Pseudomonas sp., glutarylamidase [TaxId: 306]
(5)
1a
d1or0.1
A:,B:
1b
d1or0.2
C:,D:
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CATH Domains
(4, 8)
Info
all CATH domains
1a: CATH_1or0B01 (B:1-75,B:142-267,B:451-508)
1b: CATH_1or0D01 (D:1-75,D:142-267,D:451-508)
2a: CATH_1or0B02 (B:270-450)
2b: CATH_1or0D02 (D:270-450)
3a: CATH_1or0C00 (C:9-160)
3b: CATH_1or0A00 (A:8-160)
4a: CATH_1or0B03 (B:76-141)
4b: CATH_1or0D03 (D:76-141)
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)
(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
4-Layer Sandwich
(459)
Topology
:
Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1
(128)
Homologous Superfamily
:
Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1
(124)
Sy-77-1 (Pseudomonas sp)
(2)
1a
1or0B01
B:1-75,B:142-267,B:451-508
1b
1or0D01
D:1-75,D:142-267,D:451-508
Class
:
Mainly Alpha
(13335)
Architecture
:
Orthogonal Bundle
(10391)
Topology
:
Penicillin amidase (Acylase) alpha subunit, N-terminal domain
(46)
Homologous Superfamily
:
[code=1.10.1400.10, no name defined]
(46)
Sy-77-1 (Pseudomonas sp)
(2)
2a
1or0B02
B:270-450
2b
1or0D02
D:270-450
Topology
:
Penicillin Amidohydrolase; domain 1
(47)
Homologous Superfamily
:
Penicillin Amidohydrolase, domain 1
(47)
Sy-77-1 (Pseudomonas sp)
(2)
3a
1or0C00
C:9-160
3b
1or0A00
A:8-160
Class
:
Mainly Beta
(13760)
Architecture
:
Roll
(1513)
Topology
:
Penicillin G acylase, beta-roll domain
(38)
Homologous Superfamily
:
[code=2.30.120.10, no name defined]
(38)
Sy-77-1 (Pseudomonas sp)
(2)
4a
1or0B03
B:76-141
4b
1or0D03
D:76-141
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Pfam Domains
(1, 4)
Info
all PFAM domains
1a: PFAM_Penicil_amidase_1or0D01 (D:1-514)
1b: PFAM_Penicil_amidase_1or0D02 (D:1-514)
1c: PFAM_Penicil_amidase_1or0D03 (D:1-514)
1d: PFAM_Penicil_amidase_1or0D04 (D:1-514)
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Clan
:
NTN
(93)
Family
:
Penicil_amidase
(19)
Pseudomonas sp. (strain SY-77)
(2)
1a
Penicil_amidase-1or0D01
D:1-514
1b
Penicil_amidase-1or0D02
D:1-514
1c
Penicil_amidase-1or0D03
D:1-514
1d
Penicil_amidase-1or0D04
D:1-514
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Asym.Unit (248 KB)
Header - Asym.Unit
Biol.Unit 1 (124 KB)
Header - Biol.Unit 1
Biol.Unit 2 (123 KB)
Header - Biol.Unit 2
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