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1OQL
Asym. Unit
Info
Asym.Unit (90 KB)
Biol.Unit 1 (167 KB)
Biol.Unit 2 (85 KB)
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(1)
Title
:
MISTLETOE LECTIN I FROM VISCUM ALBUM COMPLEXED WITH GALACTOSE
Authors
:
H. Niwa, A. G. Tonevitsky, I. I. Agapov, S. Saward, U. Pfuller, R. A. Palm
Date
:
10 Mar 03 (Deposition) - 01 Jul 03 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
3.00
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A,B (2x)
Biol. Unit 2: A,B (1x)
Keywords
:
Type-Ii Ribosome-Inactivating Protein, Ricin-Like, Beta-Trefoil, Hydrolase-Sugar Binding Protein Complex
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
H. Niwa, A. G. Tonevitsky, I. I. Agapov, S. Saward, U. Pfuller, R. A. Palmer
Crystal Structure At 3 A Of Mistletoe Lectin I, A Dimeric Type-Ii Ribosome-Inactivating Protein, Complexed With Galactose
Eur. J. Biochem. V. 270 2739 2003
(for further references see the
PDB file header
)
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Hetero Components
(2, 8)
Info
All Hetero Components
1a: BETA-D-GALACTOSE (GALa)
1b: BETA-D-GALACTOSE (GALb)
2a: N-ACETYL-D-GLUCOSAMINE (NAGa)
2b: N-ACETYL-D-GLUCOSAMINE (NAGb)
2c: N-ACETYL-D-GLUCOSAMINE (NAGc)
2d: N-ACETYL-D-GLUCOSAMINE (NAGd)
2e: N-ACETYL-D-GLUCOSAMINE (NAGe)
2f: N-ACETYL-D-GLUCOSAMINE (NAGf)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
GAL
2
Ligand/Ion
BETA-D-GALACTOSE
2
NAG
6
Ligand/Ion
N-ACETYL-D-GLUCOSAMINE
[
close Hetero Component info
]
Sites
(8, 8)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
5: AC5 (SOFTWARE)
6: AC6 (SOFTWARE)
7: AC7 (SOFTWARE)
8: AC8 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
ASP B:23 , VAL B:24 , ARG B:25 , ASP B:26 , ASP B:27 , GLN B:36 , TRP B:38 , LYS B:41 , ASN B:47
BINDING SITE FOR RESIDUE GAL B 265
2
AC2
SOFTWARE
ASP B:235 , GLN B:238 , ASN B:256 , HOH B:402 , HOH B:405
BINDING SITE FOR RESIDUE GAL B 267
3
AC3
SOFTWARE
ARG A:90 , ASP A:91 , ASN A:112 , SER A:114 , ASP A:117
BINDING SITE FOR RESIDUE NAG A 270
4
AC4
SOFTWARE
ASP B:27 , PHE B:29 , ASN B:61 , HOH B:426
BINDING SITE FOR RESIDUE NAG B 280
5
AC5
SOFTWARE
ASN B:96 , LEU B:228 , NAG B:291
BINDING SITE FOR RESIDUE NAG B 290
6
AC6
SOFTWARE
TRP B:94 , NAG B:290
BINDING SITE FOR RESIDUE NAG B 291
7
AC7
SOFTWARE
PHE A:214 , PRO A:217 , THR B:11 , ASN B:44 , ASN B:136 , NAG B:301
BINDING SITE FOR RESIDUE NAG B 300
8
AC8
SOFTWARE
THR B:11 , NAG B:300
BINDING SITE FOR RESIDUE NAG B 301
[
close Site info
]
SAPs(SNPs)/Variants
(19, 19)
Info
(mutated residues are not available)
All SNPs/Variants
01: VAR_ML1_VISAL_001 (D15D, chain A, )
02: VAR_ML1_VISAL_013 (N18S, chain B, )
03: VAR_ML1_VISAL_014 (G56N, chain B, )
04: VAR_ML1_VISAL_002 (N112T, chain A, )
05: VAR_ML1_VISAL_003 (P116T, chain A, )
06: VAR_ML1_VISAL_004 (T140S, chain A, )
07: VAR_ML1_VISAL_005 (F144Y, chain A, )
08: VAR_ML1_VISAL_006 (T151A, chain A, )
09: VAR_ML1_VISAL_015 (G157Q, chain B, )
10: VAR_ML1_VISAL_007 (Y179D, chain A, )
11: VAR_ML1_VISAL_008 (A184E, chain A, )
12: VAR_ML1_VISAL_009 (V190M, chain A, )
13: VAR_ML1_VISAL_016 (C194V, chain B, )
14: VAR_ML1_VISAL_010 (I218F, chain A, )
15: VAR_ML1_VISAL_017 (G223Y, chain B, )
16: VAR_ML1_VISAL_018 (N230S, chain B, )
17: VAR_ML1_VISAL_019 (N230T, chain B, )
18: VAR_ML1_VISAL_011 (T231S, chain A, )
19: VAR_ML1_VISAL_012 (D235S, chain A, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
01
UniProt
VAR_ML1_VISAL_001
*
E
48
D
ML1_VISAL
---
---
A
D
15
D
02
UniProt
VAR_ML1_VISAL_013
*
N
319
S
ML1_VISAL
---
---
B
N
18
S
03
UniProt
VAR_ML1_VISAL_014
*
G
357
N
ML1_VISAL
---
---
B
G
56
N
04
UniProt
VAR_ML1_VISAL_002
*
N
145
T
ML1_VISAL
---
---
A
N
112
T
05
UniProt
VAR_ML1_VISAL_003
*
P
149
T
ML1_VISAL
---
---
A
P
116
T
06
UniProt
VAR_ML1_VISAL_004
*
T
173
S
ML1_VISAL
---
---
A
T
140
S
07
UniProt
VAR_ML1_VISAL_005
*
F
177
Y
ML1_VISAL
---
---
A
F
144
Y
08
UniProt
VAR_ML1_VISAL_006
*
T
184
A
ML1_VISAL
---
---
A
T
151
A
09
UniProt
VAR_ML1_VISAL_015
*
G
458
Q
ML1_VISAL
---
---
B
G
157
Q
10
UniProt
VAR_ML1_VISAL_007
*
Y
212
D
ML1_VISAL
---
---
A
Y
179
D
11
UniProt
VAR_ML1_VISAL_008
*
A
217
E
ML1_VISAL
---
---
A
A
184
E
12
UniProt
VAR_ML1_VISAL_009
*
V
223
M
ML1_VISAL
---
---
A
V
190
M
13
UniProt
VAR_ML1_VISAL_016
*
C
495
V
ML1_VISAL
---
---
B
C
194
V
14
UniProt
VAR_ML1_VISAL_010
*
I
251
F
ML1_VISAL
---
---
A
I
218
F
15
UniProt
VAR_ML1_VISAL_017
*
G
524
Y
ML1_VISAL
---
---
B
G
223
Y
16
UniProt
VAR_ML1_VISAL_018
*
N
531
S
ML1_VISAL
---
---
B
N
230
S
17
UniProt
VAR_ML1_VISAL_019
*
N
531
T
ML1_VISAL
---
---
B
N
230
T
18
UniProt
VAR_ML1_VISAL_011
*
T
264
S
ML1_VISAL
---
---
A
T
231
S
19
UniProt
VAR_ML1_VISAL_012
*
D
268
S
ML1_VISAL
---
---
A
D
235
S
* ID not provided by source
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
[
close SNP/Variant info
]
PROSITE Patterns/Profiles
(1, 2)
Info
All PROSITE Patterns/Profiles
1: RICIN_B_LECTIN (B:8-135|B:139-262)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
RICIN_B_LECTIN
PS50231
Lectin domain of ricin B chain profile.
ML1_VISAL
309-436
440-563
2
B:8-135
B:139-262
[
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]
Exons
(0, 0)
Info
All Exons
View:
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All Exon Boundaries
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(2, 3)
Info
All SCOP Domains
1a: SCOP_d1oqlb1 (B:1-137)
1b: SCOP_d1oqlb2 (B:138-263)
2a: SCOP_d1oqla_ (A:)
View:
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)
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(
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)
(
)
Families
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)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All beta proteins
(24004)
Fold
:
beta-Trefoil
(385)
Superfamily
:
Ricin B-like lectins
(91)
Family
:
Ricin B-like
(65)
Protein domain
:
Plant cytotoxin B-chain (lectin)
(21)
European mistletoe (Viscum album) [TaxId: 3972]
(12)
1a
d1oqlb1
B:1-137
1b
d1oqlb2
B:138-263
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
Ribosome inactivating proteins (RIP)
(180)
Superfamily
:
Ribosome inactivating proteins (RIP)
(180)
Family
:
Plant cytotoxins
(166)
Protein domain
:
Mistletoe lectin I A-chain
(11)
European mistletoe (Viscum album) [TaxId: 3972]
(11)
2a
d1oqla_
A:
[
close SCOP info
]
CATH Domains
(3, 4)
Info
all CATH domains
1a: CATH_1oqlA01 (A:1-167)
2a: CATH_1oqlA02 (A:168-248)
3a: CATH_1oqlB01 (B:1-139)
3b: CATH_1oqlB02 (B:140-263)
View:
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)
(
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)
(
)
Topologies
(
)
(
)
Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
3-Layer(aba) Sandwich
(12045)
Topology
:
Ricin (A subunit); domain 1
(112)
Homologous Superfamily
:
Ricin (A subunit), domain 1
(112)
European mistletoe (Viscum album)
(14)
1a
1oqlA01
A:1-167
Class
:
Few Secondary Structures
(1120)
Architecture
:
Irregular
(1120)
Topology
:
Ricin (A Subunit), domain 2
(112)
Homologous Superfamily
:
Ricin (A Subunit), domain 2
(112)
European mistletoe (Viscum album)
(14)
2a
1oqlA02
A:168-248
Class
:
Mainly Beta
(13760)
Architecture
:
Trefoil
(289)
Topology
:
Trefoil (Acidic Fibroblast Growth Factor, subunit A)
(289)
Homologous Superfamily
:
[code=2.80.10.50, no name defined]
(289)
European mistletoe (Viscum album)
(14)
3a
1oqlB01
B:1-139
3b
1oqlB02
B:140-263
[
close CATH info
]
Pfam Domains
(0, 0)
Info
all PFAM domains
View:
Select:
Label:
Sorry, no Info available
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