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1OQE
Biol. Unit 1
Info
Asym.Unit (275 KB)
Biol.Unit 1, α-C (1.5 MB)
Biol.Unit 1 (1.5 MB)
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(1)
Title
:
CRYSTAL STRUCTURE OF STALL-1 WITH BAFF-R
Authors
:
G. Zhang
Date
:
07 Mar 03 (Deposition) - 13 May 03 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.50
Chains
:
Asym. Unit : A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R
Biol. Unit 1: A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R (6x)
Keywords
:
Ligand Receptor Complex, Immune System
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
Y. Liu, X. Hong, J. Kappler, L. Jiang, R. Zhang, L. Xu, C. H. Pan, W. E. Martin, R. C. Murphy, H. B. Shu, S. Dai, G. Zhang
Ligand-Receptor Binding Revealed By The Tnf Family Member Tall-1.
Nature V. 423 49 2003
(for further references see the
PDB file header
)
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Hetero Components
(0, 0)
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Sites
(0, 0)
Info
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SAPs(SNPs)/Variants
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(mutated residues are only available for the asymmetric unit)
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Sorry, no Info available
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PROSITE Patterns/Profiles
(1, 60)
Info
All PROSITE Patterns/Profiles
1: TNF_2 (A:7-143,B:7-143,C:7-143,D:7-143,E:...)
;
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
TNF_2
PS50049
TNF family profile.
TN13B_HUMAN
148-284
60
A:7-143
B:7-143
C:7-143
D:7-143
E:7-143
F:7-143
G:7-143
H:7-143
I:7-143
J:7-143
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Exons
(0, 0)
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Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(2, 18)
Info
All SCOP Domains
1a: SCOP_d1oqea_ (A:)
1b: SCOP_d1oqee_ (E:)
1c: SCOP_d1oqef_ (F:)
1d: SCOP_d1oqeg_ (G:)
1e: SCOP_d1oqeh_ (H:)
1f: SCOP_d1oqei_ (I:)
1g: SCOP_d1oqej_ (J:)
1h: SCOP_d1oqeb_ (B:)
1i: SCOP_d1oqec_ (C:)
1j: SCOP_d1oqed_ (D:)
2a: SCOP_d1oqek_ (K:)
2b: SCOP_d1oqel_ (L:)
2c: SCOP_d1oqem_ (M:)
2d: SCOP_d1oqen_ (N:)
2e: SCOP_d1oqeo_ (O:)
2f: SCOP_d1oqep_ (P:)
2g: SCOP_d1oqeq_ (Q:)
2h: SCOP_d1oqer_ (R:)
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Classes
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)
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Folds
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Superfamilies
(
)
(
)
Families
(
)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All beta proteins
(24004)
Fold
:
TNF-like
(100)
Superfamily
:
TNF-like
(100)
Family
:
TNF-like
(82)
Protein domain
:
Soluble part of TALL-1, sTALL-1 (BAFF)
(6)
Human (Homo sapiens) [TaxId: 9606]
(6)
1a
d1oqea_
A:
1b
d1oqee_
E:
1c
d1oqef_
F:
1d
d1oqeg_
G:
1e
d1oqeh_
H:
1f
d1oqei_
I:
1g
d1oqej_
J:
1h
d1oqeb_
B:
1i
d1oqec_
C:
1j
d1oqed_
D:
Class
:
Small proteins
(3458)
Fold
:
TNF receptor-like
(25)
Superfamily
:
TNF receptor-like
(25)
Family
:
BAFF receptor-like
(7)
Protein domain
:
Tumor necrosis factor receptor superfamily member 13c, BAFF-R, Br3
(2)
Human (Homo sapiens) [TaxId: 9606]
(2)
2a
d1oqek_
K:
2b
d1oqel_
L:
2c
d1oqem_
M:
2d
d1oqen_
N:
2e
d1oqeo_
O:
2f
d1oqep_
P:
2g
d1oqeq_
Q:
2h
d1oqer_
R:
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CATH Domains
(1, 10)
Info
all CATH domains
1a: CATH_1oqeA00 (A:1-144)
1b: CATH_1oqeB00 (B:1-144)
1c: CATH_1oqeC00 (C:1-144)
1d: CATH_1oqeD00 (D:1-144)
1e: CATH_1oqeE00 (E:1-144)
1f: CATH_1oqeF00 (F:1-144)
1g: CATH_1oqeG00 (G:1-144)
1h: CATH_1oqeH00 (H:1-144)
1i: CATH_1oqeI00 (I:1-144)
1j: CATH_1oqeJ00 (J:1-144)
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)
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(
)
(
)
Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Mainly Beta
(13760)
Architecture
:
Sandwich
(5577)
Topology
:
Jelly Rolls
(1293)
Homologous Superfamily
:
[code=2.60.120.40, no name defined]
(56)
Human (Homo sapiens)
(38)
1a
1oqeA00
A:1-144
1b
1oqeB00
B:1-144
1c
1oqeC00
C:1-144
1d
1oqeD00
D:1-144
1e
1oqeE00
E:1-144
1f
1oqeF00
F:1-144
1g
1oqeG00
G:1-144
1h
1oqeH00
H:1-144
1i
1oqeI00
I:1-144
1j
1oqeJ00
J:1-144
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Pfam Domains
(2, 18)
Info
all PFAM domains
1a: PFAM_TNF_1oqeJ01 (J:27-143)
1b: PFAM_TNF_1oqeJ02 (J:27-143)
1c: PFAM_TNF_1oqeJ03 (J:27-143)
1d: PFAM_TNF_1oqeJ04 (J:27-143)
1e: PFAM_TNF_1oqeJ05 (J:27-143)
1f: PFAM_TNF_1oqeJ06 (J:27-143)
1g: PFAM_TNF_1oqeJ07 (J:27-143)
1h: PFAM_TNF_1oqeJ08 (J:27-143)
1i: PFAM_TNF_1oqeJ09 (J:27-143)
1j: PFAM_TNF_1oqeJ10 (J:27-143)
2a: PFAM_BaffR_Tall_bind_1oqeR01 (R:1-31)
2b: PFAM_BaffR_Tall_bind_1oqeR02 (R:1-31)
2c: PFAM_BaffR_Tall_bind_1oqeR03 (R:1-31)
2d: PFAM_BaffR_Tall_bind_1oqeR04 (R:1-31)
2e: PFAM_BaffR_Tall_bind_1oqeR05 (R:1-31)
2f: PFAM_BaffR_Tall_bind_1oqeR06 (R:1-31)
2g: PFAM_BaffR_Tall_bind_1oqeR07 (R:1-31)
2h: PFAM_BaffR_Tall_bind_1oqeR08 (R:1-31)
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Clans
(
)
(
)
Families
(
)
(
)
Organisms
(
)
(
)
Clan
:
C1q_TNF
(45)
Family
:
TNF
(37)
Homo sapiens (Human)
(26)
1a
TNF-1oqeJ01
J:27-143
1b
TNF-1oqeJ02
J:27-143
1c
TNF-1oqeJ03
J:27-143
1d
TNF-1oqeJ04
J:27-143
1e
TNF-1oqeJ05
J:27-143
1f
TNF-1oqeJ06
J:27-143
1g
TNF-1oqeJ07
J:27-143
1h
TNF-1oqeJ08
J:27-143
1i
TNF-1oqeJ09
J:27-143
1j
TNF-1oqeJ10
J:27-143
Clan
:
no clan defined [family: BaffR-Tall_bind]
(2)
Family
:
BaffR-Tall_bind
(2)
Homo sapiens (Human)
(2)
2a
BaffR-Tall_bind-1oqeR01
R:1-31
2b
BaffR-Tall_bind-1oqeR02
R:1-31
2c
BaffR-Tall_bind-1oqeR03
R:1-31
2d
BaffR-Tall_bind-1oqeR04
R:1-31
2e
BaffR-Tall_bind-1oqeR05
R:1-31
2f
BaffR-Tall_bind-1oqeR06
R:1-31
2g
BaffR-Tall_bind-1oqeR07
R:1-31
2h
BaffR-Tall_bind-1oqeR08
R:1-31
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