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1OOP
Biol. Unit 1
Info
Asym.Unit (135 KB)
Biol.Unit 1, α-C (7.4 MB)
Biol.Unit 1 (7.4 MB)
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(1)
Title
:
THE CRYSTAL STRUCTURE OF SWINE VESICULAR DISEASE VIRUS
Authors
:
E. E. Fry, N. J. Knowles, J. W. I. Newman, G. Wilsden, Z. Rao, A. M. Q. King, D. I. Stuart
Date
:
04 Mar 03 (Deposition) - 22 Apr 03 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
3.00
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A,B,C,D (60x)
Keywords
:
Picornavirus Structure, Virus/Viral Protein, Virus-Receptor Interactions, Host Adaptation, Car, Daf, Coxsackievirus, X- Ray Diffraction, Icosahedral Virus
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
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)
Reference
:
E. E. Fry, N. J. Knowles, J. W. I. Newman, G. Wilsden, Z. Rao, A. M. Q. King, D. I. Stuart
Crystal Structure Of Swine Vesicular Disease Virus And Implications For Host Adaptation
J. Virol. V. 77 5475 2003
(for further references see the
PDB file header
)
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Hetero Components
(2, 120)
Info
All Hetero Components
1a: MYRISTIC ACID (MYRa)
2a: SPHINGOSINE (SPHa)
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No.
Name
Count
Type
Full Name
1
MYR
60
Ligand/Ion
MYRISTIC ACID
2
SPH
60
Ligand/Ion
SPHINGOSINE
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Sites
(2, 2)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
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Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
GLY D:2 , TYR D:32
BINDING SITE FOR RESIDUE MYR D 70
2
AC2
SOFTWARE
THR A:96 , LEU A:118 , TYR A:145 , MET A:180 , TYR A:191 , SER A:192 , MET A:215
BINDING SITE FOR RESIDUE SPH A 284
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SAPs(SNPs)/Variants
(0, 0)
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Exons
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Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
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SCOP Domains
(1, 3)
Info
All SCOP Domains
1a: SCOP_d1oop_1 (D:,B:)
1b: SCOP_d1oopa_ (A:)
1c: SCOP_d1oopc_ (C:)
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Protein Domains
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Organisms
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(
)
Class
:
All beta proteins
(24004)
Fold
:
Nucleoplasmin-like/VP (viral coat and capsid proteins)
(278)
Superfamily
:
Positive stranded ssRNA viruses
(163)
Family
:
Picornaviridae-like VP (VP1, VP2, VP3 and VP4)
(103)
Protein domain
:
Swine vesicular disease virus coat proteins
(2)
Swine vesicular disease virus [TaxId: 12075]
(2)
1a
d1oop.1
D:,B:
1b
d1oopa_
A:
1c
d1oopc_
C:
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CATH Domains
(2, 4)
Info
all CATH domains
1a: CATH_1oopD00 (D:2-69)
2a: CATH_1oopC00 (C:1-238)
2b: CATH_1oopB00 (B:10-261)
2c: CATH_1oopA00 (A:13-283)
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Organisms
(
)
(
)
Class
:
Few Secondary Structures
(1120)
Architecture
:
Irregular
(1120)
Topology
:
Rhinovirus 14, subunit 4
(101)
Homologous Superfamily
:
Rhinovirus 14, subunit 4
(68)
Swine vesicular disease virus (strain ukg/27/72). Organism_taxid: 12077. Strain: ukg-27-72. Swine vesicular disease virus (strain ukg/27/72). Organism_taxid: 12077. Strain: ukg-27-72. Swine vesicular disease virus (strain ukg/27/72). Organism_taxid: 12077. Strain: ukg-27-72.
(1)
1a
1oopD00
D:2-69
Class
:
Mainly Beta
(13760)
Architecture
:
Sandwich
(5577)
Topology
:
Jelly Rolls
(1293)
Homologous Superfamily
:
[code=2.60.120.20, no name defined]
(133)
Swine vesicular disease virus (strain ukg/27/72). Organism_taxid: 12077. Strain: ukg-27-72. Swine vesicular disease virus (strain ukg/27/72). Organism_taxid: 12077. Strain: ukg-27-72. Swine vesicular disease virus (strain ukg/27/72). Organism_taxid: 12077. Strain: ukg-27-72.
(1)
2a
1oopC00
C:1-238
2b
1oopB00
B:10-261
2c
1oopA00
A:13-283
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Pfam Domains
(2, 4)
Info
all PFAM domains
1a: PFAM_Rhv_1oopC01 (C:28-198)
1b: PFAM_Rhv_1oopC02 (C:28-198)
1c: PFAM_Rhv_1oopC03 (C:28-198)
2a: PFAM_Pico_P1A_1oopD01 (D:2-69)
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Organisms
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)
Clan
:
Viral_ssRNA_CP
(106)
Family
:
Rhv
(55)
Swine vesicular disease virus (strain UKG/27/72) (SVDV)
(1)
1a
Rhv-1oopC01
C:28-198
1b
Rhv-1oopC02
C:28-198
1c
Rhv-1oopC03
C:28-198
Clan
:
no clan defined [family: Pico_P1A]
(41)
Family
:
Pico_P1A
(41)
Swine vesicular disease virus (strain UKG/27/72) (SVDV)
(1)
2a
Pico_P1A-1oopD01
D:2-69
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