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1OO9
Asym. Unit
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Asym.Unit (89 KB)
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(1)
Title
:
ORIENTATION IN SOLUTION OF MMP-3 CATALYTIC DOMAIN AND N-TIMP-1 FROM RESIDUAL DIPOLAR COUPLINGS
Authors
:
S. Arumugam, S. R. Van Doren
Date
:
03 Mar 03 (Deposition) - 29 Jul 03 (Release) - 24 Feb 09 (Revision)
Method
:
SOLUTION NMR
Resolution
:
NOT APPLICABLE
Chains
:
Asym. Unit : A,B
Keywords
:
Protein-Protein Complex, Hydrolase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
S. Arumugam, S. R. Van Doren
Global Orientation Of Bound Mmp-3 And N-Timp-1 In Solution Via Residual Dipolar Couplings
Biochemistry V. 42 7950 2003
(for further references see the
PDB file header
)
[
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Hetero Components
(0, 0)
Info
All Hetero Components
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Sorry, no Info available
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]
Sites
(0, 0)
Info
All Sites
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Sorry, no Info available
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
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Sorry, no Info available
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PROSITE Patterns/Profiles
(3, 3)
Info
All PROSITE Patterns/Profiles
1: NTR (B:301-424)
2: TIMP (B:301-313)
3: ZINC_PROTEASE (A:198-207)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
NTR
PS50189
NTR domain profile.
TIMP1_HUMAN
24-147
1
B:301-424
2
TIMP
PS00288
Tissue inhibitors of metalloproteinases signature.
TIMP1_HUMAN
24-36
1
B:301-313
3
ZINC_PROTEASE
PS00142
Neutral zinc metallopeptidases, zinc-binding region signature.
MMP3_HUMAN
215-224
1
A:198-207
[
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Exons
(9, 9)
Info
All Exons
Exon 1.3 (B:301-318)
Exon 1.4a (B:318-344)
Exon 1.4d (B:345-387)
Exon 1.4g (B:387-426)
Exon 2.2 (A:83-100)
Exon 2.3 (A:100-150)
Exon 2.4b (A:150-192)
Exon 2.5 (A:192-247)
Exon 2.6 (A:247-250)
View:
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All Exon Boundaries
01: Boundary 1.1a/1.3
02: Boundary 1.3/1.4a
03: Boundary 1.4a/1.4d
04: Boundary 1.4d/1.4g
05: Boundary 1.4g/1.5b
06: Boundary 2.1a/2.2
07: Boundary 2.2/2.3
08: Boundary 2.3/2.4b
09: Boundary 2.4b/2.5
10: Boundary 2.5/2.6
11: Boundary 2.6/2.7
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1a
ENST00000218388
1a
ENSE00001472535
X:47441712-47441873
162
TIMP1_HUMAN
-
0
0
-
-
1.3
ENST00000218388
3
ENSE00002188016
X:47442807-47442935
129
TIMP1_HUMAN
1-41
41
1
B:301-318
18
1.4a
ENST00000218388
4a
ENSE00001687541
X:47444335-47444414
80
TIMP1_HUMAN
41-67
27
1
B:318-344
27
1.4d
ENST00000218388
4d
ENSE00002194942
X:47444604-47444730
127
TIMP1_HUMAN
68-110
43
1
B:345-387
43
1.4g
ENST00000218388
4g
ENSE00001622276
X:47444942-47445066
125
TIMP1_HUMAN
110-151
42
1
B:387-426
40
1.5b
ENST00000218388
5b
ENSE00001472498
X:47445920-47446188
269
TIMP1_HUMAN
152-207
56
0
-
-
2.1a
ENST00000299855
1a
ENSE00002171374
chr11:
102714534-102714173
362
MMP3_HUMAN
1-35
35
0
-
-
2.2
ENST00000299855
2
ENSE00001105428
chr11:
102713647-102713403
245
MMP3_HUMAN
36-117
82
1
A:83-100
18
2.3
ENST00000299855
3
ENSE00001642002
chr11:
102713310-102713162
149
MMP3_HUMAN
117-167
51
1
A:100-150
51
2.4b
ENST00000299855
4b
ENSE00001105420
chr11:
102713010-102712885
126
MMP3_HUMAN
167-209
43
1
A:150-192
43
2.5
ENST00000299855
5
ENSE00001657829
chr11:
102711324-102711160
165
MMP3_HUMAN
209-264
56
1
A:192-247
56
2.6
ENST00000299855
6
ENSE00001105427
chr11:
102710983-102710839
145
MMP3_HUMAN
264-312
49
1
A:247-250
4
2.7
ENST00000299855
7
ENSE00001105439
chr11:
102709974-102709841
134
MMP3_HUMAN
312-357
46
0
-
-
2.8
ENST00000299855
8
ENSE00001801971
chr11:
102709441-102709282
160
MMP3_HUMAN
357-410
54
0
-
-
2.9
ENST00000299855
9
ENSE00001105448
chr11:
102708132-102708029
104
MMP3_HUMAN
410-445
36
0
-
-
2.11
ENST00000299855
11
ENSE00001292630
chr11:
102706957-102706532
426
MMP3_HUMAN
445-477
33
0
-
-
[
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SCOP Domains
(2, 2)
Info
All SCOP Domains
1a: SCOP_d1oo9b_ (B:)
2a: SCOP_d1oo9a_ (A:)
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Classes
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Folds
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)
(
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Families
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)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All beta proteins
(24004)
Fold
:
OB-fold
(1179)
Superfamily
:
TIMP-like
(22)
Family
:
Tissue inhibitor of metalloproteinases, TIMP
(13)
Protein domain
:
TIMP-1
(6)
Human (Homo sapiens) [TaxId: 9606]
(6)
1a
d1oo9b_
B:
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
Zincin-like
(701)
Superfamily
:
Metalloproteases (zincins), catalytic domain
(647)
Family
:
Matrix metalloproteases, catalytic domain
(199)
Protein domain
:
Stromelysin-1 (MMP-3)
(40)
Human (Homo sapiens), fibroblast [TaxId: 9606]
(40)
2a
d1oo9a_
A:
[
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CATH Domains
(2, 2)
Info
all CATH domains
1a: CATH_1oo9A00 (A:83-250)
2a: CATH_1oo9B00 (B:301-426)
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)
Homologous Superfamilies
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)
(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
3-Layer(aba) Sandwich
(12045)
Topology
:
Collagenase (Catalytic Domain)
(236)
Homologous Superfamily
:
Collagenase (Catalytic Domain)
(234)
Human (Homo sapiens)
(153)
1a
1oo9A00
A:83-250
Class
:
Mainly Beta
(13760)
Architecture
:
Beta Barrel
(4804)
Topology
:
OB fold (Dihydrolipoamide Acetyltransferase, E2P)
(1040)
Homologous Superfamily
:
[code=2.40.50.120, no name defined]
(16)
Human (Homo sapiens)
(12)
2a
1oo9B00
B:301-426
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Pfam Domains
(0, 0)
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Asymmetric Unit 1
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