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1ON8
Asym. Unit
Info
Asym.Unit (97 KB)
Biol.Unit 1 (91 KB)
Biol.Unit 2 (351 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF MOUSE ALPHA-1,4-N-ACETYLHEXOSAMINYLTRANSFERASE (EXTL2) WITH UDP AND GLCUAB(1-3)GALB(1-O)-NAPHTHALENELMETHANOL AN ACCEPTOR SUBSTRATE ANALOG
Authors
:
L. C. Pedersen, J. Dong, F. Taniguchi, H. Kitagawa, J. M. Krahn, L. G. Ped K. Sugahara, M. Negishi
Date
:
27 Feb 03 (Deposition) - 22 Apr 03 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.70
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A,B (1x)
Biol. Unit 2: A,B (4x)
Keywords
:
Rossmann Fold, Dxd Motif, Transferase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
L. C. Pedersen, J. Dong, F. Taniguchi, H. Kitagawa, J. M. Krahn, L. G. Pedersen, K. Sugahara, M. Negishi
Crystal Structure Of An Alpha-1, 4-N-Acetylhexosaminyltransferase (Extl2), A Member Of The Exostosin Gene Family Involved In Heparan Sulfate Biosynthesis
J. Biol. Chem. V. 278 14420 2003
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Hetero Components
(5, 10)
Info
All Hetero Components
1a: BETA-D-GLUCOPYRANURONIC ACID (BDPa)
1b: BETA-D-GLUCOPYRANURONIC ACID (BDPb)
2a: 1,2-ETHANEDIOL (EDOa)
2b: 1,2-ETHANEDIOL (EDOb)
3a: BETA-D-GALACTOSE (GALa)
3b: BETA-D-GALACTOSE (GALb)
4a: MANGANESE (II) ION (MNa)
4b: MANGANESE (II) ION (MNb)
5a: URIDINE-5'-DIPHOSPHATE (UDPa)
5b: URIDINE-5'-DIPHOSPHATE (UDPb)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
BDP
2
Ligand/Ion
BETA-D-GLUCOPYRANURONIC ACID
2
EDO
2
Ligand/Ion
1,2-ETHANEDIOL
3
GAL
2
Ligand/Ion
BETA-D-GALACTOSE
4
MN
2
Ligand/Ion
MANGANESE (II) ION
5
UDP
2
Ligand/Ion
URIDINE-5'-DIPHOSPHATE
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Sites
(10, 10)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
View:
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Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
ARG A:181 , TYR A:193 , HIS A:289 , ARG A:293 , UDP A:351 , GAL A:510
BINDING SITE FOR RESIDUE BDP A 509
02
AC2
SOFTWARE
ARG A:82 , ARG A:181 , BDP A:509 , HOH A:626
BINDING SITE FOR RESIDUE GAL A 510
03
AC3
SOFTWARE
ARG B:181 , TYR B:193 , HIS B:289 , ARG B:293 , UDP B:352 , GAL B:520 , HOH B:615
BINDING SITE FOR RESIDUE BDP B 519
04
AC4
SOFTWARE
ARG B:82 , ARG B:181 , BDP B:519 , HOH B:642
BINDING SITE FOR RESIDUE GAL B 520
05
AC5
SOFTWARE
ASP A:153 , UDP A:351 , HOH A:604 , HOH A:605 , HOH A:606
BINDING SITE FOR RESIDUE MN A 600
06
AC6
SOFTWARE
ASP B:153 , UDP B:352 , HOH B:613 , HOH B:614 , HOH B:615
BINDING SITE FOR RESIDUE MN B 601
07
AC7
SOFTWARE
GLN A:72 , THR A:73 , TYR A:74 , ARG A:76 , ASN A:101 , ASN A:130 , MET A:132 , ASP A:151 , ASP A:152 , ASP A:153 , TYR A:280 , MET A:283 , TRP A:284 , BDP A:509 , MN A:600 , HOH A:604 , HOH A:605 , HOH A:606 , HOH A:639
BINDING SITE FOR RESIDUE UDP A 351
08
AC8
SOFTWARE
GLN B:72 , THR B:73 , TYR B:74 , ARG B:76 , ASN B:101 , ASN B:130 , MET B:132 , ASP B:151 , ASP B:152 , ASP B:153 , MET B:283 , TRP B:284 , HIS B:289 , BDP B:519 , MN B:601 , HOH B:613 , HOH B:615
BINDING SITE FOR RESIDUE UDP B 352
09
AC9
SOFTWARE
PHE A:171 , GLN A:174 , PRO A:260 , ILE A:314 , HOH A:622
BINDING SITE FOR RESIDUE EDO A 401
10
BC1
SOFTWARE
GLN A:170 , PHE B:171 , GLN B:174 , PRO B:260 , HOH B:604
BINDING SITE FOR RESIDUE EDO B 402
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
View:
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Sorry, no Info available
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PROSITE Patterns/Profiles
(0, 0)
Info
All PROSITE Patterns/Profiles
;
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End label:
Sorry, no Info available
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Exons
(3, 6)
Info
All Exons
Exon 1.6b (A:63-146 | B:63-146)
Exon 1.7 (A:146-169 | B:146-169)
Exon 1.8c (A:170-327 | B:170-327 (gaps))
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All Exon Boundaries
1: Boundary 1.3/1.6b
2: Boundary 1.6b/1.7
3: Boundary 1.7/1.8c
4: Boundary 1.8c/-
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1a
ENSMUST00000029575
1a
ENSMUSE00000501817
chr3:
115710380-115710800
421
EXTL2_MOUSE
-
0
0
-
-
1.3
ENSMUST00000029575
3
ENSMUSE00000901963
chr3:
115713540-115713614
75
EXTL2_MOUSE
1-3
3
0
-
-
1.6b
ENSMUST00000029575
6b
ENSMUSE00000587207
chr3:
115726925-115727352
428
EXTL2_MOUSE
3-146
144
2
A:63-146
B:63-146
84
84
1.7
ENSMUST00000029575
7
ENSMUSE00000174716
chr3:
115728243-115728313
71
EXTL2_MOUSE
146-169
24
2
A:146-169
B:146-169
24
24
1.8c
ENSMUST00000029575
8c
ENSMUSE00000325875
chr3:
115729931-115731934
2004
EXTL2_MOUSE
170-330
161
2
A:170-327
B:170-327 (gaps)
158
158
[
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SCOP Domains
(1, 2)
Info
All SCOP Domains
1a: SCOP_d1on8a_ (A:)
1b: SCOP_d1on8b_ (B:)
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Protein Domains
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(
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Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
Nucleotide-diphospho-sugar transferases
(408)
Superfamily
:
Nucleotide-diphospho-sugar transferases
(408)
Family
:
Exostosin
(4)
Protein domain
:
Alpha-1,4-N-acetylhexosaminyltransferase (Alpha-GalNAcT EXTL2)
(4)
Mouse (Mus musculus) [TaxId: 10090]
(4)
1a
d1on8a_
A:
1b
d1on8b_
B:
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CATH Domains
(1, 2)
Info
all CATH domains
1a: CATH_1on8A00 (A:63-327)
1b: CATH_1on8B00 (B:63-327)
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)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
Alpha-Beta Complex
(3881)
Topology
:
Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A
(231)
Homologous Superfamily
:
Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A
(231)
House mouse (Mus musculus)
(18)
1a
1on8A00
A:63-327
1b
1on8B00
B:63-327
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Pfam Domains
(1, 2)
Info
all PFAM domains
1a: PFAM_Glyco_transf_64_1on8B01 (B:67-321)
1b: PFAM_Glyco_transf_64_1on8B02 (B:67-321)
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Clan
:
GT-A
(172)
Family
:
Glyco_transf_64
(4)
Mus musculus (Mouse)
(4)
1a
Glyco_transf_64-1on8B01
B:67-321
1b
Glyco_transf_64-1on8B02
B:67-321
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Asymmetric Unit 1
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Asym.Unit (97 KB)
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