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1OMX
Asym. Unit
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Asym.Unit (90 KB)
Biol.Unit 1 (85 KB)
Biol.Unit 2 (331 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF MOUSE ALPHA-1,4-N-ACETYLHEXOSAMINYLTRANSFERASE (EXTL2)
Authors
:
L. C. Pedersen, J. Dong, F. Taniguchi, H. Kitagawa, J. M. Krahn, L. G. Pedersen, K. Sugahara, M. Negishi
Date
:
26 Feb 03 (Deposition) - 22 Apr 03 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.40
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A,B (1x)
Biol. Unit 2: A,B (4x)
Keywords
:
Dxd Motif, Rossmann Fold, Transferase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
L. C. Pedersen, J. Dong, F. Taniguchi, H. Kitagawa, J. M. Krahn, L. G. Pedersen, K. Sugahara, M. Negishi
Crystal Structure Of An Alpha-1, 4-N-Acetylhexosaminyltransferase (Extl2), A Member Of The Exostosin Gene Family Involved In Heparan Sulfate Biosynthesis
J. Biol. Chem. V. 278 14420 2003
(for further references see the
PDB file header
)
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Hetero Components
(1, 3)
Info
All Hetero Components
1a: 1,2-ETHANEDIOL (EDOa)
1b: 1,2-ETHANEDIOL (EDOb)
1c: 1,2-ETHANEDIOL (EDOc)
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No.
Name
Count
Type
Full Name
1
EDO
3
Ligand/Ion
1,2-ETHANEDIOL
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Sites
(3, 3)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
PHE A:171 , GLN A:174 , PRO A:260 , ILE A:314 , HOH A:432
BINDING SITE FOR RESIDUE EDO A 401
2
AC2
SOFTWARE
PHE B:171 , GLN B:174 , PRO B:260 , ILE B:263 , HOH B:417
BINDING SITE FOR RESIDUE EDO B 402
3
AC3
SOFTWARE
LYS A:222 , TYR A:223
BINDING SITE FOR RESIDUE EDO A 403
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SAPs(SNPs)/Variants
(0, 0)
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(mutated residues are not available)
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PROSITE Patterns/Profiles
(0, 0)
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Exons
(3, 6)
Info
All Exons
Exon 1.6b (A:63-146 (gaps) | B:63-146)
Exon 1.7 (A:146-169 | B:146-169)
Exon 1.8c (A:170-327 (gaps) | B:170-327 (gaps...)
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1: Boundary 1.3/1.6b
2: Boundary 1.6b/1.7
3: Boundary 1.7/1.8c
4: Boundary 1.8c/-
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1a
ENSMUST00000029575
1a
ENSMUSE00000501817
chr3:
115710380-115710800
421
EXTL2_MOUSE
-
0
0
-
-
1.3
ENSMUST00000029575
3
ENSMUSE00000901963
chr3:
115713540-115713614
75
EXTL2_MOUSE
1-3
3
0
-
-
1.6b
ENSMUST00000029575
6b
ENSMUSE00000587207
chr3:
115726925-115727352
428
EXTL2_MOUSE
3-146
144
2
A:63-146 (gaps)
B:63-146
84
84
1.7
ENSMUST00000029575
7
ENSMUSE00000174716
chr3:
115728243-115728313
71
EXTL2_MOUSE
146-169
24
2
A:146-169
B:146-169
24
24
1.8c
ENSMUST00000029575
8c
ENSMUSE00000325875
chr3:
115729931-115731934
2004
EXTL2_MOUSE
170-330
161
2
A:170-327 (gaps)
B:170-327 (gaps)
158
158
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SCOP Domains
(1, 2)
Info
All SCOP Domains
1a: SCOP_d1omxa_ (A:)
1b: SCOP_d1omxb_ (B:)
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Protein Domains
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(
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Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
Nucleotide-diphospho-sugar transferases
(408)
Superfamily
:
Nucleotide-diphospho-sugar transferases
(408)
Family
:
Exostosin
(4)
Protein domain
:
Alpha-1,4-N-acetylhexosaminyltransferase (Alpha-GalNAcT EXTL2)
(4)
Mouse (Mus musculus) [TaxId: 10090]
(4)
1a
d1omxa_
A:
1b
d1omxb_
B:
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CATH Domains
(1, 2)
Info
all CATH domains
1a: CATH_1omxB00 (B:63-327)
1b: CATH_1omxA00 (A:63-327)
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(
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Class
:
Alpha Beta
(26913)
Architecture
:
Alpha-Beta Complex
(3881)
Topology
:
Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A
(231)
Homologous Superfamily
:
Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A
(231)
House mouse (Mus musculus)
(18)
1a
1omxB00
B:63-327
1b
1omxA00
A:63-327
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Pfam Domains
(1, 2)
Info
all PFAM domains
1a: PFAM_Glyco_transf_64_1omxB01 (B:67-321)
1b: PFAM_Glyco_transf_64_1omxB02 (B:67-321)
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Clan
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GT-A
(172)
Family
:
Glyco_transf_64
(4)
Mus musculus (Mouse)
(4)
1a
Glyco_transf_64-1omxB01
B:67-321
1b
Glyco_transf_64-1omxB02
B:67-321
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