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1OM9
Asym. Unit
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Asym.Unit (55 KB)
Biol.Unit 1 (26 KB)
Biol.Unit 2 (26 KB)
Biol.Unit 3 (50 KB)
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(1)
Title
:
STRUCTURE OF THE GGA1-APPENDAGE IN COMPLEX WITH THE P56 BINDING PEPTIDE
Authors
:
B. M. Collins, G. J. K. Praefcke, M. S. Robinson, D. J. Owen
Date
:
25 Feb 03 (Deposition) - 29 Jul 03 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.50
Chains
:
Asym. Unit : A,B,P,Q
Biol. Unit 1: A,P (1x)
Biol. Unit 2: B,Q (1x)
Biol. Unit 3: A,B,P,Q (1x)
Keywords
:
Beta Sandwich, Beta Augmentation, Gga, Adaptin, Clathrin Adaptor, Protein Transport, Signaling Protein
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
B. M. Collins, G. J. K. Praefcke, M. S. Robinson, D. J. Owen
Structural Basis For Binding Of Accessory Proteins By The Appendage Domain Of Ggas
Nat. Struct. Biol. V. 10 607 2003
(for further references see the
PDB file header
)
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Hetero Components
(0, 0)
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Sites
(0, 0)
Info
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
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PROSITE Patterns/Profiles
(1, 2)
Info
All PROSITE Patterns/Profiles
1: GAE (A:510-631,B:510-631)
;
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
GAE
PS50180
Gamma-adaptin ear (GAE) domain profile.
GGA1_HUMAN
510-631
2
A:510-631
B:510-631
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Exons
(6, 12)
Info
All Exons
Exon 1.18b (A:498-510 | B:498-510)
Exon 1.19 (A:510-566 | B:510-566)
Exon 1.20 (A:567-603 | B:567-603)
Exon 1.21d (A:604-639 | B:604-639)
Exon 2.1 (P:3-9 | Q:4-9)
Exon 2.2 (P:10-13 | Q:10-13)
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All Exon Boundaries
1: Boundary 1.17a/1.18b
2: Boundary 1.18b/1.19
3: Boundary 1.19/1.20
4: Boundary 1.20/1.21d
5: Boundary 1.21d/-
6: Boundary -/2.1
7: Boundary 2.1/2.2
8: Boundary 2.2/2.4
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1a
ENST00000343632
1a
ENSE00001813421
chr22:
38004482-38004910
429
GGA1_HUMAN
1-15
15
0
-
-
1.7c
ENST00000343632
7c
ENSE00002140158
chr22:
38010197-38010281
85
GGA1_HUMAN
15-43
29
0
-
-
1.8a
ENST00000343632
8a
ENSE00001612880
chr22:
38012929-38013004
76
GGA1_HUMAN
43-68
26
0
-
-
1.9c
ENST00000343632
9c
ENSE00001683976
chr22:
38014455-38014553
99
GGA1_HUMAN
69-101
33
0
-
-
1.10f
ENST00000343632
10f
ENSE00000880168
chr22:
38016245-38016368
124
GGA1_HUMAN
102-143
42
0
-
-
1.11b
ENST00000343632
11b
ENSE00000880169
chr22:
38016820-38016920
101
GGA1_HUMAN
143-176
34
0
-
-
1.12c
ENST00000343632
12c
ENSE00000653934
chr22:
38017623-38017703
81
GGA1_HUMAN
177-203
27
0
-
-
1.13
ENST00000343632
13
ENSE00000880172
chr22:
38019334-38019474
141
GGA1_HUMAN
204-250
47
0
-
-
1.14b
ENST00000343632
14b
ENSE00000880174
chr22:
38019559-38019640
82
GGA1_HUMAN
251-278
28
0
-
-
1.14e
ENST00000343632
14e
ENSE00001286815
chr22:
38020976-38021083
108
GGA1_HUMAN
278-314
37
0
-
-
1.15a
ENST00000343632
15a
ENSE00000653938
chr22:
38021804-38021956
153
GGA1_HUMAN
314-365
52
0
-
-
1.16
ENST00000343632
16
ENSE00000653944
chr22:
38025469-38025533
65
GGA1_HUMAN
365-386
22
0
-
-
1.17a
ENST00000343632
17a
ENSE00000653945
chr22:
38026005-38026177
173
GGA1_HUMAN
387-444
58
0
-
-
1.18b
ENST00000343632
18b
ENSE00000653946
chr22:
38026910-38027106
197
GGA1_HUMAN
444-510
67
2
A:498-510
B:498-510
13
13
1.19
ENST00000343632
19
ENSE00000653947
chr22:
38028003-38028172
170
GGA1_HUMAN
510-566
57
2
A:510-566
B:510-566
57
57
1.20
ENST00000343632
20
ENSE00000653948
chr22:
38028412-38028522
111
GGA1_HUMAN
567-603
37
2
A:567-603
B:567-603
37
37
1.21d
ENST00000343632
21d
ENSE00001823052
chr22:
38028608-38029571
964
GGA1_HUMAN
604-639
36
2
A:604-639
B:604-639
36
36
2.1
ENST00000381259
1
ENSE00001319793
chr12:
28410133-28410178
46
CCD91_HUMAN
1-10
10
2
P:3-9
Q:4-9
7
6
2.2
ENST00000381259
2
ENSE00001297407
chr12:
28412297-28412375
79
CCD91_HUMAN
11-37
27
2
P:10-13
Q:10-13
4
4
2.4
ENST00000381259
4
ENSE00001157215
chr12:
28458582-28458739
158
CCD91_HUMAN
37-89
53
0
-
-
2.5
ENST00000381259
5
ENSE00001157204
chr12:
28459675-28459878
204
CCD91_HUMAN
90-157
68
0
-
-
2.6
ENST00000381259
6
ENSE00001158522
chr12:
28460578-28460682
105
CCD91_HUMAN
158-192
35
0
-
-
2.7
ENST00000381259
7
ENSE00001157193
chr12:
28515371-28515448
78
CCD91_HUMAN
193-218
26
0
-
-
2.8
ENST00000381259
8
ENSE00001132871
chr12:
28544237-28544344
108
CCD91_HUMAN
219-254
36
0
-
-
2.9
ENST00000381259
9
ENSE00000835968
chr12:
28603094-28603186
93
CCD91_HUMAN
255-285
31
0
-
-
2.10
ENST00000381259
10
ENSE00000835969
chr12:
28603283-28603351
69
CCD91_HUMAN
286-308
23
0
-
-
2.11
ENST00000381259
11
ENSE00000835970
chr12:
28605411-28605587
177
CCD91_HUMAN
309-367
59
0
-
-
2.12
ENST00000381259
12
ENSE00000835971
chr12:
28636985-28637098
114
CCD91_HUMAN
368-405
38
0
-
-
2.13
ENST00000381259
13
ENSE00001487987
chr12:
28701996-28703098
1103
CCD91_HUMAN
406-441
36
0
-
-
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SCOP Domains
(1, 2)
Info
All SCOP Domains
1a: SCOP_d1om9a_ (A:)
1b: SCOP_d1om9b_ (B:)
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Class
:
All beta proteins
(24004)
Fold
:
Immunoglobulin-like beta-sandwich
(7299)
Superfamily
:
Clathrin adaptor appendage domain
(28)
Family
:
gamma-adaptin C-terminal appendage domain-like
(10)
Protein domain
:
ADP-ribosylation factor binding protein Gga1 domain
(2)
Human (Homo sapiens) [TaxId: 9606]
(2)
1a
d1om9a_
A:
1b
d1om9b_
B:
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CATH Domains
(1, 2)
Info
all CATH domains
1a: CATH_1om9A00 (A:498-639)
1b: CATH_1om9B00 (B:498-639)
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Organisms
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(
)
Class
:
Mainly Beta
(13760)
Architecture
:
Sandwich
(5577)
Topology
:
Immunoglobulin-like
(3897)
Homologous Superfamily
:
[code=2.60.40.1230, no name defined]
(9)
Human (Homo sapiens)
(5)
1a
1om9A00
A:498-639
1b
1om9B00
B:498-639
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Pfam Domains
(1, 2)
Info
all PFAM domains
1a: PFAM_Alpha_adaptinC2_1om9B01 (B:513-631)
1b: PFAM_Alpha_adaptinC2_1om9B02 (B:513-631)
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Clan
:
E-set
(290)
Family
:
Alpha_adaptinC2
(13)
Homo sapiens (Human)
(3)
1a
Alpha_adaptinC2-1om9B01
B:513-631
1b
Alpha_adaptinC2-1om9B02
B:513-631
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