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1OM7
Biol. Unit 2
Info
Asym.Unit (69 KB)
Biol.Unit 1 (63 KB)
Biol.Unit 2 (183 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF A COLD ADAPTED ALKALINE PROTEASE FROM PSEUDOMONAS TAC II 18, SOAKED IN 85 MM EDTA
Authors
:
S. Ravaud, P. Gouet, R. Haser, N. Aghajari
Date
:
25 Feb 03 (Deposition) - 15 Jul 03 (Release) - 07 May 14 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.80
Chains
:
Asym. Unit : A
Biol. Unit 1: A (1x)
Biol. Unit 2: A (3x)
Keywords
:
Beta Jelly Roll, Hydrolase
(Keyword Search:
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Reference
:
S. Ravaud, P. Gouet, R. Haser, N. Aghajari
Probing The Role Of Divalent Metal Ions In A Bacterial Psychrophilic Metalloprotease: Binding Studies Of An Enzyme In The Crystalline State By X-Ray Crystallography.
J. Bacteriol. V. 185 4195 2003
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Hetero Components
(1, 3)
Info
All Hetero Components
1a: CALCIUM ION (CAa)
1b: CALCIUM ION (CAb)
1c: CALCIUM ION (CAc)
1d: CALCIUM ION (CAd)
1e: CALCIUM ION (CAe)
2a: SULFATE ION (SO4a)
View:
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No.
Name
Count
Type
Full Name
1
CA
-1
Ligand/Ion
CALCIUM ION
2
SO4
3
Ligand/Ion
SULFATE ION
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Sites
(6, 6)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
5: AC5 (SOFTWARE)
6: AC6 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
ARG A:250 , ASP A:252 , THR A:254 , ASP A:282 , GLY A:284 , ASP A:287
BINDING SITE FOR RESIDUE CA A 701
2
AC2
SOFTWARE
GLY A:331 , GLY A:333 , ASP A:335 , GLY A:348 , ALA A:350 , ASP A:353
BINDING SITE FOR RESIDUE CA A 703
3
AC3
SOFTWARE
ALA A:350 , GLY A:351 , ASP A:353 , GLY A:366 , THR A:368 , ASP A:371
BINDING SITE FOR RESIDUE CA A 704
4
AC4
SOFTWARE
ASN A:340 , ALA A:342 , ASN A:344 , GLY A:357 , GLY A:359 , ASP A:362
BINDING SITE FOR RESIDUE CA A 705
5
AC5
SOFTWARE
GLY A:358 , GLY A:359 , GLY A:360 , ASP A:362 , ASP A:380 , ASP A:387
BINDING SITE FOR RESIDUE CA A 706
6
AC6
SOFTWARE
ARG A:139 , TRP A:210 , SER A:211 , ASN A:214 , HOH A:1368
BINDING SITE FOR RESIDUE SO4 A 500
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are only available for the asymmetric unit)
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PROSITE Patterns/Profiles
(, 0)
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Exons
(0, 0)
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
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SCOP Domains
(2, 2)
Info
All SCOP Domains
1a: SCOP_d1om7a1 (A:245-463)
2a: SCOP_d1om7a2 (A:3-244)
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Protein Domains
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)
(
)
Organisms
(
)
(
)
Class
:
All beta proteins
(24004)
Fold
:
Single-stranded right-handed beta-helix
(140)
Superfamily
:
beta-Roll
(25)
Family
:
Serralysin-like metalloprotease, C-terminal domain
(24)
Protein domain
:
Metalloprotease
(24)
Pseudomonas sp., tac ii 18 [TaxId: 306]
(8)
1a
d1om7a1
A:245-463
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
Zincin-like
(701)
Superfamily
:
Metalloproteases (zincins), catalytic domain
(647)
Family
:
Serralysin-like metalloprotease, catalytic (N-terminal) domain
(25)
Protein domain
:
Metalloprotease
(24)
Pseudomonas sp., tac ii 18 [TaxId: 306]
(8)
2a
d1om7a2
A:3-244
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CATH Domains
(2, 2)
Info
all CATH domains
1a: CATH_1om7A02 (A:20-247)
2a: CATH_1om7A01 (A:3-19,A:248-461)
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)
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)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
3-Layer(aba) Sandwich
(12045)
Topology
:
Collagenase (Catalytic Domain)
(236)
Homologous Superfamily
:
Collagenase (Catalytic Domain)
(234)
'tac ii 18' (Pseudomonas sp)
(6)
1a
1om7A02
A:20-247
Class
:
Mainly Beta
(13760)
Architecture
:
2 Solenoid
(23)
Topology
:
Alkaline Protease, subunit P, domain 1
(23)
Homologous Superfamily
:
Alkaline Protease, subunit P, domain 1
(23)
'tac ii 18' (Pseudomonas sp)
(6)
2a
1om7A01
A:3-19,A:248-461
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Pfam Domains
(3, 5)
Info
all PFAM domains
1a: PFAM_Reprolysin_2_1om7A01 (A:78-223)
2a: PFAM_HemolysinCabind_1om7A02 (A:356-373)
2b: PFAM_HemolysinCabind_1om7A03 (A:356-373)
2c: PFAM_HemolysinCabind_1om7A04 (A:356-373)
3a: PFAM_Peptidase_M10_C_1om7A05 (A:245-463)
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Organisms
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Clan
:
Peptidase_MA
(251)
Family
:
Reprolysin_2
(7)
Pseudomonas sp. TAC II 18
(6)
1a
Reprolysin_2-1om7A01
A:78-223
Clan
:
no clan defined [family: HemolysinCabind]
(16)
Family
:
HemolysinCabind
(16)
Pseudomonas sp. TAC II 18
(6)
2a
HemolysinCabind-1om7A02
A:356-373
2b
HemolysinCabind-1om7A03
A:356-373
2c
HemolysinCabind-1om7A04
A:356-373
Clan
:
no clan defined [family: Peptidase_M10_C]
(10)
Family
:
Peptidase_M10_C
(10)
Pseudomonas sp. TAC II 18
(6)
3a
Peptidase_M10_C-1om7A05
A:245-463
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