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1OM4
Asym. Unit
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Asym.Unit (158 KB)
Biol.Unit 1 (153 KB)
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(1)
Title
:
STRUCTURE OF RAT NEURONAL NOS HEME DOMAIN WITH L-ARGININE BOUND
Authors
:
H. Li, P. Martasek, H. Shimizu, B. S. S. Masters, T. L. Poulos, C. S. Raman
Date
:
24 Feb 03 (Deposition) - 11 Mar 03 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.75
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A,B (1x)
Keywords
:
Nitric Oxide Synthase, Oxidoreductase, Heme-Enzyme
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
H. Li, P. Martasek, H. Shimizu, B. S. S. Masters, T. L. Poulos, C. S. Rama
Structure Of Rat Neuronal Nos Heme Domain With L-Arginine Bound
To Be Published
(for further references see the
PDB file header
)
[
close entry info
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Hetero Components
(6, 11)
Info
All Hetero Components
1a: ACETATE ION (ACTa)
1b: ACETATE ION (ACTb)
2a: ARGININE (ARGa)
2b: ARGININE (ARGb)
3a: GLYCEROL (GOLa)
3b: GLYCEROL (GOLb)
4a: 5,6,7,8-TETRAHYDROBIOPTERIN (H4Ba)
4b: 5,6,7,8-TETRAHYDROBIOPTERIN (H4Bb)
5a: PROTOPORPHYRIN IX CONTAINING FE (HEMa)
5b: PROTOPORPHYRIN IX CONTAINING FE (HEMb)
6a: ZINC ION (ZNa)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
ACT
2
Ligand/Ion
ACETATE ION
2
ARG
2
Mod. Amino Acid
ARGININE
3
GOL
2
Ligand/Ion
GLYCEROL
4
H4B
2
Ligand/Ion
5,6,7,8-TETRAHYDROBIOPTERIN
5
HEM
2
Ligand/Ion
PROTOPORPHYRIN IX CONTAINING FE
6
ZN
1
Ligand/Ion
ZINC ION
[
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]
Sites
(11, 11)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
View:
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Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
CYS A:326 , CYS A:331 , CYS B:326 , CYS B:331
BINDING SITE FOR RESIDUE ZN A 900
02
AC2
SOFTWARE
TRP A:587 , VAL A:649 , HOH A:972 , HOH A:1019 , HOH A:1088
BINDING SITE FOR RESIDUE ACT A 860
03
AC3
SOFTWARE
TRP B:587 , VAL B:649 , HOH B:962 , HOH B:996 , HOH B:1020 , HOH B:1063
BINDING SITE FOR RESIDUE ACT B 861
04
AC4
SOFTWARE
TRP A:409 , ARG A:414 , CYS A:415 , SER A:457 , PHE A:584 , SER A:585 , TRP A:587 , GLU A:592 , TRP A:678 , TYR A:706 , H4B A:760 , HOH A:912 , HOH A:923 , HOH A:935 , HOH A:958 , HOH A:987 , ARG B:770
BINDING SITE FOR RESIDUE HEM A 750
05
AC5
SOFTWARE
TRP B:409 , ARG B:414 , CYS B:415 , SER B:457 , PHE B:584 , SER B:585 , TRP B:587 , GLU B:592 , TRP B:678 , TYR B:706 , H4B B:761 , ARG B:771 , HOH B:883 , HOH B:907 , HOH B:937 , HOH B:941 , HOH B:1002
BINDING SITE FOR RESIDUE HEM B 750
06
AC6
SOFTWARE
SER A:334 , MET A:336 , ARG A:596 , VAL A:677 , TRP A:678 , HEM A:750 , HOH A:901 , HOH A:918 , HOH A:934 , HOH A:935 , HOH A:994 , TRP B:676 , PHE B:691 , HIS B:692 , GLN B:693 , GLU B:694
BINDING SITE FOR RESIDUE H4B A 760
07
AC7
SOFTWARE
TRP A:676 , PHE A:691 , HIS A:692 , GLU A:694 , SER B:334 , ARG B:596 , VAL B:677 , TRP B:678 , HEM B:750 , HOH B:886 , HOH B:907 , HOH B:922 , HOH B:933 , HOH B:1197
BINDING SITE FOR RESIDUE H4B B 761
08
AC8
SOFTWARE
GLN A:478 , TYR A:562 , TRP A:587 , TYR A:588 , GLU A:592 , ASP A:597 , HEM A:750 , HOH B:901 , HOH B:942 , HOH B:1255
BINDING SITE FOR RESIDUE ARG B 770
09
AC9
SOFTWARE
GLN B:478 , TYR B:562 , TRP B:587 , TYR B:588 , GLU B:592 , ASP B:597 , HEM B:750 , HOH B:893 , HOH B:906 , HOH B:1075
BINDING SITE FOR RESIDUE ARG B 771
10
BC1
SOFTWARE
LYS A:319 , ARG A:669 , THR A:701 , HOH A:965 , HOH A:1091
BINDING SITE FOR RESIDUE GOL A 880
11
BC2
SOFTWARE
LEU B:316 , GLN B:364 , ARG B:669 , HOH B:945 , HOH B:1160
BINDING SITE FOR RESIDUE GOL B 881
[
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
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Sorry, no Info available
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PROSITE Patterns/Profiles
(1, 2)
Info
All PROSITE Patterns/Profiles
1: NOS (A:414-421,B:414-421)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
NOS
PS60001
Nitric oxide synthase (NOS) signature.
NOS1_RAT
414-421
2
A:414-421
B:414-421
[
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]
Exons
(0, 0)
Info
All Exons
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(1, 2)
Info
All SCOP Domains
1a: SCOP_d1om4a_ (A:)
1b: SCOP_d1om4b_ (B:)
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(
)
(
)
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(
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(
)
(
)
Families
(
)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
Nitric oxide (NO) synthase oxygenase domain
(313)
Superfamily
:
Nitric oxide (NO) synthase oxygenase domain
(313)
Family
:
Nitric oxide (NO) synthase oxygenase domain
(313)
Protein domain
:
Nitric oxide (NO) synthase oxygenase domain
(298)
Norway rat (Rattus norvegicus) [TaxId: 10116]
(154)
1a
d1om4a_
A:
1b
d1om4b_
B:
[
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CATH Domains
(3, 6)
Info
all CATH domains
1a: CATH_1om4A03 (A:543-565,A:588-653)
1b: CATH_1om4B03 (B:543-565,B:588-653)
2a: CATH_1om4B01 (B:314-430,B:457-467,B:571-585,B:655-679)
2b: CATH_1om4A01 (A:314-430,A:457-467,A:571-585,A:655-679)
3a: CATH_1om4A02 (A:431-456,A:471-542,A:706-710)
3b: CATH_1om4B02 (B:431-456,B:471-542,B:706-710)
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Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
Alpha-Beta Complex
(3881)
Topology
:
Bovine Endothelial Nitric Oxide Synthase Heme Domain; Chain: A,domain 3
(105)
Homologous Superfamily
:
Nitric Oxide Synthase; Chain A, domain 3
(105)
Norway rat (Rattus norvegicus)
(25)
1a
1om4A03
A:543-565,A:588-653
1b
1om4B03
B:543-565,B:588-653
Topology
:
Nitric Oxide Synthase; Chain A, domain 1
(105)
Homologous Superfamily
:
Nitric Oxide Synthase; Chain A, domain 1
(105)
Norway rat (Rattus norvegicus)
(25)
2a
1om4B01
B:314-430,B:457-467,B:571-585,B:655-679
2b
1om4A01
A:314-430,A:457-467,A:571-585,A:655-679
Topology
:
Nitric Oxide Synthase;Heme Domain; Chain A, domain 2
(105)
Homologous Superfamily
:
Nitric Oxide Synthase;Heme Domain;Chain A domain 2
(105)
Norway rat (Rattus norvegicus)
(25)
3a
1om4A02
A:431-456,A:471-542,A:706-710
3b
1om4B02
B:431-456,B:471-542,B:706-710
[
close CATH info
]
Pfam Domains
(1, 2)
Info
all PFAM domains
1a: PFAM_NO_synthase_1om4B01 (B:348-717)
1b: PFAM_NO_synthase_1om4B02 (B:348-717)
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Clans
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Families
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)
(
)
Organisms
(
)
(
)
Clan
:
no clan defined [family: NO_synthase]
(140)
Family
:
NO_synthase
(140)
Rattus norvegicus (Rat)
(79)
1a
NO_synthase-1om4B01
B:348-717
1b
NO_synthase-1om4B02
B:348-717
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