PLEASE WAIT...
Getting 'Biological Unit' information from database.
PLEASE WAIT...
Getting 'Hetero Component' information from database.
PLEASE WAIT...
Getting 'Site' information from database.
PLEASE WAIT...
No precomputed SNP/Variant structure found.
Calculating the structure may take several minutes.
PLEASE WAIT...
Getting 'PROSITE' information from database.
PLEASE WAIT...
Getting 'Exon' information from database.
1OLJ
Theor. Model
Info
Theoretical Model (150 KB)
(using Jmol or JSmol)
spin
show selected part
auto zoom/center
Standard Views
(
Basic
|
Advanced
Interface
)
(
Basic
|
Advanced
Interface
)
Help
(1)
Title
:
MODEL OF RAT ALPHA3BETA4 NICOTINIC RECEPTOR
Authors
:
Le Novere
Date
:
06 Aug 03 (Deposition) - 18 Aug 03 (Release) - 18 Aug 03 (Revision)
Method
:
THEORETICAL MODEL
Resolution
:
NOT APPLICABLE
Chains
:
Theor. Model : A,B,C,D,E
Keywords
:
Nicotinic Receptor, Acetycholine Receptor, Postsynaptic Membrane, Ionic Channel, Glycoprotein
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
N. Le Novere, T. Grutter, J. -P. Changeux
Models Of The Extracellular Domain Of The Nicotinic Receptors And Of Agonist And Ca++ Binding Sites
Proc. Nat. Acad. Sci. Usa. V. 99 3210 2002
(for further references see the
PDB file header
)
[
close entry info
]
Hetero Components
(0, 0)
Info
All Hetero Components
View:
Select:
Label:
Sorry, no Info available
[
close Hetero component info
]
Sites
(0, 0)
Info
All Sites
View:
Select:
Label:
Sorry, no Info available
[
close Site info
]
SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
View:
Select:
Label:
Sorry, no Info available
[
close SNP/Variant info
]
PROSITE Patterns/Profiles
(1, 5)
Info
All PROSITE Patterns/Profiles
1: NEUROTR_ION_CHANNEL (B:128-142,D:128-142,E:128-142,A:12...)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
NEUROTR_ION_CHANNEL
PS00236
Neurotransmitter-gated ion-channels signature.
ACHB4_RAT
152-166
3
B:128-142
D:128-142
E:128-142
ACHA3_RAT
153-167
2
A:126-140
C:126-140
[
close PROSITE info
]
Exons
(4, 12)
Info
All Exons
Exon 1.4a (B:1-43 | D:1-43 | E:1-43)
Exon 1.5 (B:44-58 | D:44-58 | E:44-58)
Exon 1.6 (B:59-95 | D:59-95 | E:59-95)
Exon 1.7 (B:95-207 | D:95-207 | E:95-207)
View:
Select:
Label:
All Exon Boundaries
1: Boundary 1.1/1.4a
2: Boundary 1.4a/1.5
3: Boundary 1.5/1.6
4: Boundary 1.6/1.7
5: Boundary 1.7/1.8
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1
ENSRNOT00000019458
1
ENSRNOE00000258432
chr8:
58605605-58605494
112
ACHB4_RAT
1-18
18
0
-
-
1.4a
ENSRNOT00000019458
4a
ENSRNOE00000138065
chr8:
58600810-58600662
149
ACHB4_RAT
18-67
50
3
B:1-43
D:1-43
E:1-43
43
43
43
1.5
ENSRNOT00000019458
5
ENSRNOE00000138201
chr8:
58593667-58593623
45
ACHB4_RAT
68-82
15
3
B:44-58
D:44-58
E:44-58
15
15
15
1.6
ENSRNOT00000019458
6
ENSRNOE00000138337
chr8:
58593520-58593411
110
ACHB4_RAT
83-119
37
3
B:59-95
D:59-95
E:59-95
37
37
37
1.7
ENSRNOT00000019458
7
ENSRNOE00000138487
chr8:
58592682-58591692
991
ACHB4_RAT
119-449
331
3
B:95-207
D:95-207
E:95-207
113
113
113
1.8
ENSRNOT00000019458
8
ENSRNOE00000398764
chr8:
58587101-58586895
207
ACHB4_RAT
450-495
46
0
-
-
[
close EXON info
]
SCOP Domains
(0, 0)
Info
All SCOP Domains
View:
Select:
Label:
Sorry, no Info available
[
close SCOP info
]
CATH Domains
(0, 0)
Info
all CATH domains
View:
Select:
Label:
Sorry, no Info available
[
close CATH info
]
Pfam Domains
(0, 0)
Info
all PFAM domains
View:
Select:
Label:
Sorry, no Info available
[
close Pfam info
]
Atom Selection
(currently selected atoms:
all
)
Protein
Nucleic
Backbone
Sidechain
Hetero
Ligand
Solvent
All Atoms
Protein & NOT Variant
Protein & NOT Site
Protein & NOT PROSITE
Chain A
Chain B
Chain C
Chain D
Chain E
Asymmetric Unit 1
Rendering
(selected part)
Molecule Coloring
(selected part)
by Chain (Asym. Unit)
by Chain (Biol. Unit)
by Secondary Structure
by Atom (CPK)
by SCOP Domain
by CATH Domain
by Pfam Domain
by Asymmetric Unit
by Exon
by Amino Acid
by Nucleotide
by Temperature
by Charge
by Rainbow (Group)
by Custom Color
Background Coloring
Choose
molecule
background
color...
[
close
]
RGB value
(e.g.: "#3cb371" or "60,179,113")
Stereo
Graphics Window
x
pixel
Miscellaneous
Script
Example Commands
Example Command
Action
select :A, :C
select chains 'A' and 'C'
select [ALA]:A
select all 'ALA' residues (Alanines) in chain 'A'
select 5-10
select residue range 5 to 10 in all chains
select 5-10:A
select residue range 5 to 10 in chain 'A'
select protein & not helix & not sheet
select non-helix/non-sheet protein parts
set fontsize 20
set label size to 20 (allowed range: 1-58)
ssbonds 100
show SS bonds with a radius of 100 units (=0.4Å)
wireframe 100
show bonds with a radius of 100 units (=0.4Å)
[
close Script example commands
]
Log
Note:
In this "Basic Interface" any change in the selection of a pulldown menu automatically triggers an action (one-step mechanism).
View and selection are coupled in the structure specific controls (e.g. "Hetero","PROSITE") .
Note:
In this "Advanced Interface" any change in the selection of a pulldown menu only sets the target for the corresponding control buttons (two-step mechanism).
View and selection are set independently in the structure specific controls (e.g. "Hetero","PROSITE") .
QuickSearch:
by PDB,NDB,UniProt,PROSITE Code or
Search Term(s)
Show PDB file:
Theoretical Model (150 KB)
Header - Theoretical Model
Plain Text
HTML (compressed size)
use JSmol [Javascript]
use Jmol [Java applet]
Upload:
Select a local file
OR
Enter a remote file address
You can upload any molecular structure file format that is recognized by Jmol,
e.g.: PDB, mmCif, CIF, CML, MOL, XYZ
(also compressed with 'gzip', see the
Jmol documentation
for a complete list)
JenaLib Atlas Page
|
Sequence/Alignment View
1OLJ
Jmol Script Commands
|
Jmol Color Schemes
|
Jmol Mouse Manual
|
Jmol Wiki
controls:
collapse
expand
Home
JenaLib
Jmol Scripting
Contact
Help