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1OL0
Biol. Unit 1
Info
Asym.Unit (55 KB)
Biol.Unit 1 (26 KB)
Biol.Unit 2 (26 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF A CAMELISED HUMAN VH
Authors
:
T. Dottorini, C. K. Vaughan, M. A. Walsh, P. Losurdo, M. Sollazzo
Date
:
02 Aug 03 (Deposition) - 22 Jan 04 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.80
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Keywords
:
Immunoglobulin, Camelised Variable Heavy Domain
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
T. Dottorini, C. K. Vaughan, M. A. Walsh, P. Losurdo, M. Sollazzo
Crystal Structure Of A Human Vh: Requirements For Maintaining A Monomeric Fragment
Biochemistry V. 43 622 2004
(for further references see the
PDB file header
)
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Hetero Components
(3, 7)
Info
All Hetero Components
1a: GLYCEROL (GOLa)
1b: GLYCEROL (GOLb)
1c: GLYCEROL (GOLc)
1d: GLYCEROL (GOLd)
1e: GLYCEROL (GOLe)
2a: SELENOMETHIONINE (MSEa)
2b: SELENOMETHIONINE (MSEb)
2c: SELENOMETHIONINE (MSEc)
2d: SELENOMETHIONINE (MSEd)
3a: SULFATE ION (SO4a)
3b: SULFATE ION (SO4b)
3c: SULFATE ION (SO4c)
3d: SULFATE ION (SO4d)
3e: SULFATE ION (SO4e)
View:
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Label:
No.
Name
Count
Type
Full Name
1
GOL
4
Ligand/Ion
GLYCEROL
2
MSE
2
Mod. Amino Acid
SELENOMETHIONINE
3
SO4
1
Ligand/Ion
SULFATE ION
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Sites
(8, 8)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC5 (SOFTWARE)
5: AC6 (SOFTWARE)
6: AC7 (SOFTWARE)
7: AC8 (SOFTWARE)
8: AC9 (SOFTWARE)
View:
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No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
PHE A:27 , THR A:28 , TYR A:32 , ARG A:101 , HOH A:2049 , HOH A:2194
BINDING SITE FOR RESIDUE SO4 A1122
2
AC2
SOFTWARE
GLY A:8 , GLU B:44 , ARG B:45 , HOH B:2078 , HOH B:2122 , HOH B:2183 , HOH B:2184 , HOH B:2185 , HOH B:2186 , HOH B:2187
BINDING SITE FOR RESIDUE SO4 B1122
3
AC3
SOFTWARE
ARG A:65 , HOH A:2102 , ARG B:104 , HOH B:2188
BINDING SITE FOR RESIDUE SO4 B1123
4
AC5
SOFTWARE
ARG A:104 , ARG B:65 , HOH B:2091 , HOH B:2190
BINDING SITE FOR RESIDUE SO4 B1125
5
AC6
SOFTWARE
THR A:58 , TYR A:60 , HOH A:2127 , HOH A:2195 , THR B:58 , TYR B:60 , HOH B:2108
BINDING SITE FOR RESIDUE GOL A1123
6
AC7
SOFTWARE
GLN A:13 , SER A:120 , SER A:121 , HOH A:2018 , HOH A:2196 , PRO B:41
BINDING SITE FOR RESIDUE GOL A1124
7
AC8
SOFTWARE
ARG A:19 , HOH A:2036 , HOH A:2144 , ARG B:19 , HOH B:2121
BINDING SITE FOR RESIDUE GOL A1125
8
AC9
SOFTWARE
PHE A:27 , THR A:28 , PHE A:29 , ASN A:77 , HOH A:2051
BINDING SITE FOR RESIDUE GOL A1126
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SAPs(SNPs)/Variants
(0, 0)
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(mutated residues are only available for the asymmetric unit)
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PROSITE Patterns/Profiles
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Exons
(0, 0)
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Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(1, 2)
Info
All SCOP Domains
1a: SCOP_d1ol0a_ (A:)
1b: SCOP_d1ol0b_ (B:)
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)
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)
(
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(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All beta proteins
(24004)
Fold
:
Immunoglobulin-like beta-sandwich
(7299)
Superfamily
:
Immunoglobulin
(5995)
Family
:
V set domains (antibody variable domain-like)
(1919)
Protein domain
:
Immunoglobulin heavy chain variable domain, VH
(658)
Engineered (including hybrid species)
(68)
1a
d1ol0a_
A:
1b
d1ol0b_
B:
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CATH Domains
(1, 2)
Info
all CATH domains
1a: CATH_1ol0A00 (A:1-121)
1b: CATH_1ol0B00 (B:1-121)
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)
Homologous Superfamilies
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)
(
)
Organisms
(
)
(
)
Class
:
Mainly Beta
(13760)
Architecture
:
Sandwich
(5577)
Topology
:
Immunoglobulin-like
(3897)
Homologous Superfamily
:
Immunoglobulins
(2282)
Human (Homo sapiens)
(912)
1a
1ol0A00
A:1-121
1b
1ol0B00
B:1-121
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Pfam Domains
(0, 0)
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all PFAM domains
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Chain A
Asymmetric Unit 1
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Show PDB file:
Asym.Unit (55 KB)
Header - Asym.Unit
Biol.Unit 1 (26 KB)
Header - Biol.Unit 1
Biol.Unit 2 (26 KB)
Header - Biol.Unit 2
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