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1OKO
Asym. Unit
Info
Asym.Unit (92 KB)
Biol.Unit 1 (87 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF PSEUDOMONAS AERUGINOSA LECTIN 1 COMPLEXED WITH GALACTOSE AT 1.6 A RESOLUTION
Authors
:
G. Cioci, E. Mitchell, C. Gautier, M. Wimmerova, S. Perez, N. Gilboa-Ga A. Imberty
Date
:
28 Jul 03 (Deposition) - 04 Dec 03 (Release) - 05 Aug 15 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.60
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A,B,C,D (1x)
Keywords
:
Sugar Binding Protein, Galactose Binding
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
G. Cioci, E. Mitchell, C. Gautier, M. Wimmerova, D. Sudakevitz, S. Perez, N. Gilboa-Garber, A. Imberty
Structural Basis Of Calcium And Galactose Recognition By The Lectin Pa-Il Of Pseudomonas Aeruginosa
Febs Lett. V. 555 297 2003
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Hetero Components
(5, 15)
Info
All Hetero Components
1a: CALCIUM ION (CAa)
1b: CALCIUM ION (CAb)
1c: CALCIUM ION (CAc)
1d: CALCIUM ION (CAd)
2a: BETA-D-GALACTOSE (GALa)
2b: BETA-D-GALACTOSE (GALb)
2c: BETA-D-GALACTOSE (GALc)
2d: BETA-D-GALACTOSE (GALd)
3a: ALPHA D-GALACTOSE (GLAa)
3b: ALPHA D-GALACTOSE (GLAb)
3c: ALPHA D-GALACTOSE (GLAc)
4a: (4S)-2-METHYL-2,4-PENTANEDIOL (MPDa)
5a: SULFATE ION (SO4a)
5b: SULFATE ION (SO4b)
5c: SULFATE ION (SO4c)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
CA
4
Ligand/Ion
CALCIUM ION
2
GAL
4
Ligand/Ion
BETA-D-GALACTOSE
3
GLA
3
Ligand/Ion
ALPHA D-GALACTOSE
4
MPD
1
Ligand/Ion
(4S)-2-METHYL-2,4-PENTANEDIOL
5
SO4
3
Ligand/Ion
SULFATE ION
[
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Sites
(15, 15)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
View:
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Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
TYR A:36 , HIS A:50 , GLN A:53 , ASP A:100 , THR A:104 , ASN A:107 , CA A:900 , HOH A:2069 , HOH A:2126 , HOH A:2127 , HOH A:2128 , HOH A:2129
BINDING SITE FOR RESIDUE GAL A 901
02
AC2
SOFTWARE
TYR B:36 , HIS B:50 , GLN B:53 , ASP B:100 , THR B:104 , ASN B:107 , CA B:900 , HOH B:2054 , HOH B:2058 , HOH B:2099 , HOH B:2100 , HOH B:2101
BINDING SITE FOR RESIDUE GLA B 901
03
AC3
SOFTWARE
TYR B:36 , HIS B:50 , GLN B:53 , ASP B:100 , THR B:104 , ASN B:107 , CA B:900 , HOH B:2054 , HOH B:2099 , HOH B:2100 , HOH B:2101
BINDING SITE FOR RESIDUE GAL B 902
04
AC4
SOFTWARE
TYR C:36 , HIS C:50 , GLN C:53 , ASP C:100 , THR C:104 , ASN C:107 , CA C:900 , HOH C:2066 , HOH C:2116 , HOH C:2117 , HOH C:2118 , HOH C:2119 , HOH C:2120
BINDING SITE FOR RESIDUE GLA C 901
05
AC5
SOFTWARE
TYR C:36 , HIS C:50 , GLN C:53 , ASP C:100 , THR C:104 , ASN C:107 , CA C:900 , HOH C:2116 , HOH C:2117 , HOH C:2119 , HOH C:2120
BINDING SITE FOR RESIDUE GAL C 902
06
AC6
SOFTWARE
HOH B:2050 , HOH B:2102 , TYR D:36 , HIS D:50 , GLN D:53 , ASP D:100 , THR D:104 , ASN D:107 , CA D:900 , HOH D:2065 , HOH D:2120 , HOH D:2121
BINDING SITE FOR RESIDUE GLA D 901
07
AC7
SOFTWARE
HOH B:2102 , TYR D:36 , HIS D:50 , GLN D:53 , ASP D:100 , THR D:104 , ASN D:107 , CA D:900 , HOH D:2065 , HOH D:2120
BINDING SITE FOR RESIDUE GAL D 902
08
AC8
SOFTWARE
TYR A:36 , ASP A:100 , THR A:104 , ASN A:107 , ASN A:108 , GAL A:901
BINDING SITE FOR RESIDUE CA A 900
09
AC9
SOFTWARE
GLY A:73 , THR A:74 , HOH A:2130 , HOH A:2131 , HOH A:2132
BINDING SITE FOR RESIDUE SO4 A 902
10
BC1
SOFTWARE
ILE A:56 , HIS A:58 , HOH A:2133 , HOH A:2134 , HOH A:2135 , ARG C:48 , LYS D:41 , HOH D:2046
BINDING SITE FOR RESIDUE SO4 A 903
11
BC2
SOFTWARE
TYR B:36 , ASP B:100 , THR B:104 , ASN B:107 , ASN B:108 , GLA B:901 , GAL B:902
BINDING SITE FOR RESIDUE CA B 900
12
BC3
SOFTWARE
LYS A:41 , ARG B:48 , HOH B:2102 , HOH B:2103 , HOH B:2104
BINDING SITE FOR RESIDUE SO4 B 904
13
BC4
SOFTWARE
TYR C:36 , ASP C:100 , THR C:104 , ASN C:107 , ASN C:108 , GLA C:901 , GAL C:902
BINDING SITE FOR RESIDUE CA C 900
14
BC5
SOFTWARE
TYR D:36 , ASP D:100 , THR D:104 , ASN D:107 , ASN D:108 , GLA D:901 , GAL D:902
BINDING SITE FOR RESIDUE CA D 900
15
BC6
SOFTWARE
ASN A:88 , HOH A:2136 , HOH A:2137 , GLN C:45 , ASN C:78 , TRP D:33
BINDING SITE FOR RESIDUE MPD A 905
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
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PROSITE Patterns/Profiles
(0, 0)
Info
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Exons
(0, 0)
Info
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(1, 4)
Info
All SCOP Domains
1a: SCOP_d1okoa_ (A:)
1b: SCOP_d1okob_ (B:)
1c: SCOP_d1okoc_ (C:)
1d: SCOP_d1okod_ (D:)
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Protein Domains
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Organisms
(
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(
)
Class
:
All beta proteins
(24004)
Fold
:
Galactose-binding domain-like
(314)
Superfamily
:
Galactose-binding domain-like
(314)
Family
:
PA-IL, galactose-binding lectin 1
(12)
Protein domain
:
PA-IL, galactose-binding lectin 1
(12)
Pseudomonas aeruginosa [TaxId: 287]
(12)
1a
d1okoa_
A:
1b
d1okob_
B:
1c
d1okoc_
C:
1d
d1okod_
D:
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CATH Domains
(1, 4)
Info
all CATH domains
1a: CATH_1okoA00 (A:1-121)
1b: CATH_1okoB00 (B:1-121)
1c: CATH_1okoC00 (C:1-121)
1d: CATH_1okoD00 (D:1-121)
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)
Organisms
(
)
(
)
Class
:
Mainly Beta
(13760)
Architecture
:
Sandwich
(5577)
Topology
:
Jelly Rolls
(1293)
Homologous Superfamily
:
Galactose-binding lectin
(5)
Pseudomonas aeruginosa. Organism_taxid: 287
(3)
1a
1okoA00
A:1-121
1b
1okoB00
B:1-121
1c
1okoC00
C:1-121
1d
1okoD00
D:1-121
[
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Pfam Domains
(1, 4)
Info
all PFAM domains
1a: PFAM_PA_IL_1okoD01 (D:1-120)
1b: PFAM_PA_IL_1okoD02 (D:1-120)
1c: PFAM_PA_IL_1okoD03 (D:1-120)
1d: PFAM_PA_IL_1okoD04 (D:1-120)
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)
Organisms
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)
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)
Clan
:
GBD
(153)
Family
:
PA-IL
(5)
Pseudomonas aeruginosa
(5)
1a
PA-IL-1okoD01
D:1-120
1b
PA-IL-1okoD02
D:1-120
1c
PA-IL-1okoD03
D:1-120
1d
PA-IL-1okoD04
D:1-120
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Asymmetric Unit 1
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