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1OK4
Biol. Unit 1
Info
Asym.Unit (407 KB)
Biol.Unit 1 (203 KB)
Biol.Unit 2 (204 KB)
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(1)
Title
:
ARCHAEAL FRUCTOSE 1,6-BISPHOSPHATE ALDOLASE COVALENTLY BOUND TO THE SUBSTRATE DIHYDROXYACETONE PHOSPHATE
Authors
:
E. Lorentzen, P. Zwart, A. Stark, R. Hensel, B. Siebers, E. Pohl
Date
:
17 Jul 03 (Deposition) - 04 Sep 03 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.10
Chains
:
Asym. Unit : A,B,C,D,E,F,G,H,I,J
Biol. Unit 1: A,B,C,D,E (1x)
Biol. Unit 2: F,G,H,I,J (1x)
Keywords
:
Aldolase, Fructose 1, 6-Bisphosphate, Tim Barrel, Glycolytic, Archaeal, Lyase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
E. Lorentzen, E. Pohl, P. Zwart, A. Stark, R. Russell, T. Knura, R. Hensel, B. Siebers
Crystal Structure Of An Archaeal Class I Aldolase And The Evolution Of (Beta Alpha)8 Barrel Proteins
J. Biol. Chem. V. 278 47253 2003
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Hetero Components
(1, 5)
Info
All Hetero Components
1a: 1,3-DIHYDROXYACETONEPHOSPHATE (13Pa)
1b: 1,3-DIHYDROXYACETONEPHOSPHATE (13Pb)
1c: 1,3-DIHYDROXYACETONEPHOSPHATE (13Pc)
1d: 1,3-DIHYDROXYACETONEPHOSPHATE (13Pd)
1e: 1,3-DIHYDROXYACETONEPHOSPHATE (13Pe)
1f: 1,3-DIHYDROXYACETONEPHOSPHATE (13Pf)
1g: 1,3-DIHYDROXYACETONEPHOSPHATE (13Pg)
1h: 1,3-DIHYDROXYACETONEPHOSPHATE (13Ph)
1i: 1,3-DIHYDROXYACETONEPHOSPHATE (13Pi)
1j: 1,3-DIHYDROXYACETONEPHOSPHATE (13Pj)
View:
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Label:
No.
Name
Count
Type
Full Name
1
13P
5
Ligand/Ion
1,3-DIHYDROXYACETONEPHOSPHATE
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Sites
(5, 5)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
5: AC5 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
ALA A:22 , ASP A:24 , HIS A:25 , TRP A:144 , LYS A:177 , GLY A:203 , GLY A:204 , ALA A:229 , VAL A:230 , GLY A:231 , ARG A:232 , HOH A:2072
BINDING SITE FOR RESIDUE 13P A1254
2
AC2
SOFTWARE
ALA B:22 , ASP B:24 , HIS B:25 , TRP B:144 , LYS B:177 , GLY B:203 , GLY B:204 , ALA B:229 , VAL B:230 , GLY B:231 , ARG B:232 , HOH B:2066
BINDING SITE FOR RESIDUE 13P B1254
3
AC3
SOFTWARE
ALA C:22 , ASP C:24 , HIS C:25 , TRP C:144 , LYS C:177 , SER C:202 , GLY C:203 , GLY C:204 , ALA C:229 , VAL C:230 , GLY C:231 , ARG C:232 , HOH C:2056
BINDING SITE FOR RESIDUE 13P C1254
4
AC4
SOFTWARE
ASP D:24 , HIS D:25 , TRP D:144 , LYS D:177 , SER D:202 , GLY D:203 , GLY D:204 , ALA D:229 , VAL D:230 , GLY D:231 , ARG D:232 , HOH D:2052 , HOH D:2053
BINDING SITE FOR RESIDUE 13P D1254
5
AC5
SOFTWARE
ALA E:22 , ASP E:24 , HIS E:25 , TRP E:144 , LYS E:177 , SER E:202 , GLY E:203 , GLY E:204 , ALA E:229 , VAL E:230 , GLY E:231 , ARG E:232 , HOH E:2061 , HOH E:2062 , HOH E:2063
BINDING SITE FOR RESIDUE 13P E1256
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SAPs(SNPs)/Variants
(0, 0)
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(mutated residues are only available for the asymmetric unit)
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PROSITE Patterns/Profiles
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Exons
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(1, 10)
Info
All SCOP Domains
1a: SCOP_d1ok4a_ (A:)
1b: SCOP_d1ok4b_ (B:)
1c: SCOP_d1ok4c_ (C:)
1d: SCOP_d1ok4d_ (D:)
1e: SCOP_d1ok4e_ (E:)
1f: SCOP_d1ok4f_ (F:)
1g: SCOP_d1ok4g_ (G:)
1h: SCOP_d1ok4h_ (H:)
1i: SCOP_d1ok4i_ (I:)
1j: SCOP_d1ok4j_ (J:)
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)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
TIM beta/alpha-barrel
(3956)
Superfamily
:
Aldolase
(457)
Family
:
Class I aldolase
(182)
Protein domain
:
Archaeal fructose 1,6-bisphosphate aldolase
(5)
Thermoproteus tenax [TaxId: 2271]
(5)
1a
d1ok4a_
A:
1b
d1ok4b_
B:
1c
d1ok4c_
C:
1d
d1ok4d_
D:
1e
d1ok4e_
E:
1f
d1ok4f_
F:
1g
d1ok4g_
G:
1h
d1ok4h_
H:
1i
d1ok4i_
I:
1j
d1ok4j_
J:
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CATH Domains
(1, 10)
Info
all CATH domains
1a: CATH_1ok4E00 (E:3-255)
1b: CATH_1ok4A00 (A:3-253)
1c: CATH_1ok4B00 (B:3-253)
1d: CATH_1ok4C00 (C:3-253)
1e: CATH_1ok4D00 (D:3-253)
1f: CATH_1ok4F00 (F:3-253)
1g: CATH_1ok4G00 (G:3-253)
1h: CATH_1ok4H00 (H:3-253)
1i: CATH_1ok4I00 (I:3-253)
1j: CATH_1ok4J00 (J:3-253)
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Organisms
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Class
:
Alpha Beta
(26913)
Architecture
:
Alpha-Beta Barrel
(2994)
Topology
:
TIM Barrel
(2806)
Homologous Superfamily
:
Aldolase class I
(887)
Thermoproteus tenax. Organism_taxid: 2271.
(6)
1a
1ok4E00
E:3-255
1b
1ok4A00
A:3-253
1c
1ok4B00
B:3-253
1d
1ok4C00
C:3-253
1e
1ok4D00
D:3-253
1f
1ok4F00
F:3-253
1g
1ok4G00
G:3-253
1h
1ok4H00
H:3-253
1i
1ok4I00
I:3-253
1j
1ok4J00
J:3-253
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Pfam Domains
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Asymmetric Unit 1
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Show PDB file:
Asym.Unit (407 KB)
Header - Asym.Unit
Biol.Unit 1 (203 KB)
Header - Biol.Unit 1
Biol.Unit 2 (204 KB)
Header - Biol.Unit 2
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