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Asym. Unit
Info
Asym.Unit (87 KB)
Biol.Unit 1 (82 KB)
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(1)
Title
:
DECAY ACCELERATING FACTOR (CD55): THE STRUCTURE OF AN INTACT HUMAN COMPLEMENT REGULATOR.
Authors
:
P. Lukacik, P. Roversi, J. White, D. Esser, G. P. Smith, J. Billington, P. A. Williams, P. M. Rudd, M. R. Wormald, M. D. M. Crispin, C. M. Radcliffe, C. M. Dwek, D. J. Evans, B. P. Morgan, R. A. G. Smith, S. M. Lea
Date
:
16 Jul 03 (Deposition) - 07 Jan 04 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.30
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A,B (1x)
Keywords
:
Regulator Of Complement Pathway, Regulator Of Complement, Decay Acceleration Of C3/C5 Convertases, Pathogen Receptor, Short Consensus Repeat Domains
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
P. Lukacik, P. Roversi, J. White, D. Esser, G. P. Smith, J. Billington, P. A. Williams, P. M. Rudd, M. R. Wormald, D. J. Harvey, M. D. M. Crispin, C. M. Radcliffe, R. A. Dwek, D. J. Evans, B. P. Morgan, R. A. G. Smith, S. M. Lea
Complement Regulation At The Molecular Level: The Structure Of Decay-Accelerating Factor
Proc. Natl. Acad. Sci. Usa V. 101 1279 2004
(for further references see the
PDB file header
)
[
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Hetero Components
(2, 4)
Info
All Hetero Components
1a: GLYCEROL (GOLa)
1b: GLYCEROL (GOLb)
2a: SULFATE ION (SO4a)
2b: SULFATE ION (SO4b)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
GOL
2
Ligand/Ion
GLYCEROL
2
SO4
2
Ligand/Ion
SULFATE ION
[
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]
Sites
(4, 4)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
TYR A:213 , ARG A:214 , THR A:236 , TYR B:213 , ARG B:214
BINDING SITE FOR RESIDUE SO4 A1254
2
AC2
SOFTWARE
GLN A:215 , ARG B:138
BINDING SITE FOR RESIDUE SO4 A1255
3
AC3
SOFTWARE
CYS A:4 , GLY A:5 , LEU A:6 , PRO A:8 , SER A:53 , TRP A:55
BINDING SITE FOR RESIDUE GOL A1256
4
AC4
SOFTWARE
LYS B:78
BINDING SITE FOR RESIDUE GOL A1257
[
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SAPs(SNPs)/Variants
(6, 12)
Info
(mutated residues are not available)
All SNPs/Variants
1: VAR_001997 (R20L, chain A/B, )
2: VAR_001998 (R20P, chain A/B, )
3: VAR_001999 (L50R, chain A/B, )
4: VAR_002000 (S167L, chain A/B, )
5: VAR_002001 (A195P, chain A/B, )
6: VAR_015884 (R208H, chain A/B, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_001997
R
52
L
DAF_HUMAN
Polymorphism
28371588
A/B
R
20
L
2
UniProt
VAR_001998
R
52
P
DAF_HUMAN
Polymorphism
28371588
A/B
R
20
P
3
UniProt
VAR_001999
L
82
R
DAF_HUMAN
Polymorphism
147474393
A/B
L
50
R
4
UniProt
VAR_002000
S
199
L
DAF_HUMAN
Polymorphism
56283594
A/B
S
167
L
5
UniProt
VAR_002001
A
227
P
DAF_HUMAN
Polymorphism
60822373
A/B
A
195
P
6
UniProt
VAR_015884
R
240
H
DAF_HUMAN
Polymorphism
---
A/B
R
208
H
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
[
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]
PROSITE Patterns/Profiles
(1, 7)
Info
All PROSITE Patterns/Profiles
1: SUSHI (A:64-128,B:64-128|A:3-62|A:129-190...)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
SUSHI
PS50923
Sushi/CCP/SCR domain profile.
DAF_HUMAN
96-160
34-94
161-222
223-285
7
A:64-128
B:64-128
A:3-62
A:129-190
B:129-190
A:191-253
B:191-253
[
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Exons
(7, 13)
Info
All Exons
Exon 1.1a (A:2-2 | -)
Exon 1.3 (A:2-64 | B:3-64)
Exon 1.4b (A:64-128 | B:64-128)
Exon 1.5 (A:128-161 | B:128-161)
Exon 1.6 (A:161-190 | B:161-190)
Exon 1.7 (A:190-253 | B:190-253)
Exon 1.8b (A:253-253 | B:253-253)
View:
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All Exon Boundaries
1: Boundary -/1.1a
2: Boundary 1.1a/1.3
3: Boundary 1.3/1.4b
4: Boundary 1.4b/1.5
5: Boundary 1.5/1.6
6: Boundary 1.6/1.7
7: Boundary 1.7/1.8b
8: Boundary 1.8b/1.8d
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1a
ENST00000367064
1a
ENSE00001840627
chr1:
207494853-207495210
358
DAF_HUMAN
1-34
34
1
A:2-2
-
1
-
1.3
ENST00000367064
3
ENSE00001443405
chr1:
207495727-207495912
186
DAF_HUMAN
34-96
63
2
A:2-64
B:3-64
63
62
1.4b
ENST00000367064
4b
ENSE00001443404
chr1:
207497904-207498095
192
DAF_HUMAN
96-160
65
2
A:64-128
B:64-128
65
65
1.5
ENST00000367064
5
ENSE00001069638
chr1:
207498967-207499066
100
DAF_HUMAN
160-193
34
2
A:128-161
B:128-161
34
34
1.6
ENST00000367064
6
ENSE00001069637
chr1:
207500097-207500182
86
DAF_HUMAN
193-222
30
2
A:161-190
B:161-190
30
30
1.7
ENST00000367064
7
ENSE00000960173
chr1:
207504453-207504641
189
DAF_HUMAN
222-285
64
2
A:190-253
B:190-253
64
64
1.8b
ENST00000367064
8b
ENSE00001041396
chr1:
207510038-207510163
126
DAF_HUMAN
285-327
43
2
A:253-253
B:253-253
1
1
1.8d
ENST00000367064
8d
ENSE00001253047
chr1:
207510674-207510754
81
DAF_HUMAN
327-354
28
0
-
-
1.9
ENST00000367064
9
ENSE00001432766
chr1:
207512742-207512762
21
DAF_HUMAN
354-361
8
0
-
-
1.15f
ENST00000367064
15f
ENSE00001631743
chr1:
207532891-207534311
1421
DAF_HUMAN
361-381
21
0
-
-
[
close EXON info
]
SCOP Domains
(1, 8)
Info
All SCOP Domains
1a: SCOP_d1ojwa1 (A:2-64)
1b: SCOP_d1ojwa2 (A:65-128)
1c: SCOP_d1ojwa3 (A:129-190)
1d: SCOP_d1ojwa4 (A:191-253)
1e: SCOP_d1ojwb1 (B:3-64)
1f: SCOP_d1ojwb2 (B:65-128)
1g: SCOP_d1ojwb3 (B:129-190)
1h: SCOP_d1ojwb4 (B:191-253)
View:
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(
)
(
)
Folds
(
)
(
)
Superfamilies
(
)
(
)
Families
(
)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Small proteins
(3458)
Fold
:
Complement control module/SCR domain
(70)
Superfamily
:
Complement control module/SCR domain
(70)
Family
:
Complement control module/SCR domain
(67)
Protein domain
:
Complement decay-accelerating factor (Daf, CD55)
(18)
Human (Homo sapiens) [TaxId: 9606]
(18)
1a
d1ojwa1
A:2-64
1b
d1ojwa2
A:65-128
1c
d1ojwa3
A:129-190
1d
d1ojwa4
A:191-253
1e
d1ojwb1
B:3-64
1f
d1ojwb2
B:65-128
1g
d1ojwb3
B:129-190
1h
d1ojwb4
B:191-253
[
close SCOP info
]
CATH Domains
(1, 8)
Info
all CATH domains
1a: CATH_1ojwA04 (A:192-253)
1b: CATH_1ojwA03 (A:129-191)
1c: CATH_1ojwB03 (B:129-191)
1d: CATH_1ojwB01 (B:3-64)
1e: CATH_1ojwA01 (A:2-64)
1f: CATH_1ojwA02 (A:65-128)
1g: CATH_1ojwB02 (B:65-128)
1h: CATH_1ojwB04 (B:192-253)
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)
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)
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)
Topologies
(
)
(
)
Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Mainly Beta
(13760)
Architecture
:
Ribbon
(789)
Topology
:
Complement Module; domain 1
(62)
Homologous Superfamily
:
Complement Module, domain 1
(60)
Human (Homo sapiens)
(46)
1a
1ojwA04
A:192-253
1b
1ojwA03
A:129-191
1c
1ojwB03
B:129-191
1d
1ojwB01
B:3-64
1e
1ojwA01
A:2-64
1f
1ojwA02
A:65-128
1g
1ojwB02
B:65-128
1h
1ojwB04
B:192-253
[
close CATH info
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Pfam Domains
(1, 8)
Info
all PFAM domains
1a: PFAM_Sushi_1ojwB01 (B:193-251)
1b: PFAM_Sushi_1ojwB02 (B:193-251)
1c: PFAM_Sushi_1ojwB03 (B:193-251)
1d: PFAM_Sushi_1ojwB04 (B:193-251)
1e: PFAM_Sushi_1ojwB05 (B:193-251)
1f: PFAM_Sushi_1ojwB06 (B:193-251)
1g: PFAM_Sushi_1ojwB07 (B:193-251)
1h: PFAM_Sushi_1ojwB08 (B:193-251)
View:
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Clans
(
)
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(
)
(
)
Organisms
(
)
(
)
Clan
:
no clan defined [family: Sushi]
(50)
Family
:
Sushi
(50)
Homo sapiens (Human)
(42)
1a
Sushi-1ojwB01
B:193-251
1b
Sushi-1ojwB02
B:193-251
1c
Sushi-1ojwB03
B:193-251
1d
Sushi-1ojwB04
B:193-251
1e
Sushi-1ojwB05
B:193-251
1f
Sushi-1ojwB06
B:193-251
1g
Sushi-1ojwB07
B:193-251
1h
Sushi-1ojwB08
B:193-251
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Asymmetric Unit 1
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Asym.Unit (87 KB)
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