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1OIY
Biol. Unit 1
Info
Asym.Unit (195 KB)
Biol.Unit 1 (98 KB)
Biol.Unit 2 (94 KB)
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(1)
Title
:
STRUCTURE OF HUMAN THR160-PHOSPHO CDK2/CYCLIN A COMPLEXED WITH A 6-CYCLOHEXYLMETHYLOXY-2-ANILINO-PURINE INHIBITOR
Authors
:
D. J. Pratt, J. A. Endicott, M. E. M. Noble
Date
:
26 Jun 03 (Deposition) - 13 Jul 04 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.40
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A,B (1x)
Biol. Unit 2: C,D (1x)
Keywords
:
Kinase, Transferase, Serine/Threonine-Protein Kinase, Atp- Binding, Cell Cycle, Cell Division, Mitosis, Phosphorylation
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
I. R. Hardcastle, C. E. Arris, J. Bentley, F. T. Boyle, Y. Chen, N. J. Curtin, J. A. Endicott, A. E. Gibson, B. T. Golding, R. J. Griffin, P. Jewsbury, J. Menyerol, V. Mesguiche, D. R. Newell, M. E. M. Noble, D. J. Pratt, L. -Z. Wang, H. J. Whitfield
N2-Substituted O6-Cyclohexylmethylguanine Derivatives: Potent Inhibitors Of Cyclin-Dependent Kinases 1 And 2
J. Med. Chem. V. 47 3710 2004
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Hetero Components
(3, 3)
Info
All Hetero Components
1a: MAGNESIUM ION (MGa)
2a: 4-(6-CYCLOHEXYLMETHOXY-9H-PURIN-2-... (N41a)
2b: 4-(6-CYCLOHEXYLMETHOXY-9H-PURIN-2-... (N41b)
3a: MONOTHIOGLYCEROL (SGMa)
3b: MONOTHIOGLYCEROL (SGMb)
4a: PHOSPHOTHREONINE (TPOa)
4b: PHOSPHOTHREONINE (TPOb)
View:
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Label:
No.
Name
Count
Type
Full Name
1
MG
-1
Ligand/Ion
MAGNESIUM ION
2
N41
1
Ligand/Ion
4-(6-CYCLOHEXYLMETHOXY-9H-PURIN-2-YLAMINO)--BENZAMIDE
3
SGM
1
Ligand/Ion
MONOTHIOGLYCEROL
4
TPO
1
Mod. Amino Acid
PHOSPHOTHREONINE
[
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Sites
(3, 3)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC4 (SOFTWARE)
View:
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Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
MET B:200 , GLN B:203 , ILE B:206 , HOH B:2004 , HOH B:2025
BINDING SITE FOR RESIDUE MG B1433
2
AC2
SOFTWARE
ILE A:10 , GLU A:12 , VAL A:18 , ALA A:31 , VAL A:64 , PHE A:80 , GLU A:81 , LEU A:83 , HIS A:84 , ASP A:86 , LYS A:89 , GLN A:131 , ASN A:132 , LEU A:134 , HOH A:2117 , HOH A:2118 , HOH A:2119
BINDING SITE FOR RESIDUE N41 A1298
3
AC4
SOFTWARE
MET B:189 , LYS B:192 , CYS B:193 , HOH B:2107
BINDING SITE FOR RESIDUE SGM B1193
[
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SAPs(SNPs)/Variants
(4, 4)
Info
(mutated residues are only available for the asymmetric unit)
All SNPs/Variants
1: VAR_016157 (Y15S, chain A, )
2: VAR_053927 (V18L, chain A, )
3: VAR_041972 (P45L, chain A, )
4: VAR_019988 (T290S, chain A, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_016157
Y
15
S
CDK2_HUMAN
Polymorphism
3087335
A
Y
15
S
2
UniProt
VAR_053927
V
18
L
CDK2_HUMAN
Polymorphism
11554376
A
V
18
L
3
UniProt
VAR_041972
P
45
L
CDK2_HUMAN
Unclassified
---
A
P
45
L
4
UniProt
VAR_019988
T
290
S
CDK2_HUMAN
Polymorphism
2069413
A
T
290
S
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
[
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]
PROSITE Patterns/Profiles
(3, 3)
Info
All PROSITE Patterns/Profiles
1: PROTEIN_KINASE_ATP (A:10-33)
2: PROTEIN_KINASE_ST (A:123-135)
3: CYCLINS (B:211-242)
;
View:
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
PROTEIN_KINASE_ATP
PS00107
Protein kinases ATP-binding region signature.
CDK2_HUMAN
10-33
1
A:10-33
-
2
PROTEIN_KINASE_ST
PS00108
Serine/Threonine protein kinases active-site signature.
CDK2_HUMAN
123-135
1
A:123-135
-
3
CYCLINS
PS00292
Cyclins signature.
CCNA2_HUMAN
211-242
1
B:211-242
-
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Exons
(0, 0)
Info
All Exons
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(2, 6)
Info
All SCOP Domains
1a: SCOP_d1oiyb1 (B:175-309)
1b: SCOP_d1oiyb2 (B:310-432)
1c: SCOP_d1oiyd1 (D:175-309)
1d: SCOP_d1oiyd2 (D:310-432)
2a: SCOP_d1oiya_ (A:)
2b: SCOP_d1oiyc_ (C:)
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)
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)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All alpha proteins
(14657)
Fold
:
Cyclin-like
(137)
Superfamily
:
Cyclin-like
(137)
Family
:
Cyclin
(117)
Protein domain
:
Cyclin A
(82)
Human (Homo sapiens) [TaxId: 9606]
(73)
1a
d1oiyb1
B:175-309
1b
d1oiyb2
B:310-432
1c
d1oiyd1
D:175-309
1d
d1oiyd2
D:310-432
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
Protein kinase-like (PK-like)
(2589)
Superfamily
:
Protein kinase-like (PK-like)
(2589)
Family
:
Protein kinases, catalytic subunit
(1977)
Protein domain
:
Cyclin-dependent PK, CDK2
(340)
Human (Homo sapiens) [TaxId: 9606]
(336)
2a
d1oiya_
A:
2b
d1oiyc_
C:
[
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CATH Domains
(3, 8)
Info
all CATH domains
1a: CATH_1oiyC01 (C:1-84)
1b: CATH_1oiyA01 (A:1-84)
2a: CATH_1oiyB01 (B:181-194,B:308-432)
2b: CATH_1oiyB02 (B:195-307)
2c: CATH_1oiyD02 (D:195-307)
2d: CATH_1oiyD01 (D:181-194,D:308-432)
3a: CATH_1oiyA02 (A:85-295)
3b: CATH_1oiyC02 (C:85-295)
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)
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(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
2-Layer Sandwich
(8480)
Topology
:
Phosphorylase Kinase; domain 1
(1392)
Homologous Superfamily
:
Phosphorylase Kinase; domain 1
(1392)
Human (Homo sapiens)
(1036)
1a
1oiyC01
C:1-84
1b
1oiyA01
A:1-84
Class
:
Mainly Alpha
(13335)
Architecture
:
Orthogonal Bundle
(10391)
Topology
:
Cyclin A; domain 1
(136)
Homologous Superfamily
:
[code=1.10.472.10, no name defined]
(99)
Human (Homo sapiens)
(84)
2a
1oiyB01
B:181-194,B:308-432
2b
1oiyB02
B:195-307
2c
1oiyD02
D:195-307
2d
1oiyD01
D:181-194,D:308-432
Topology
:
Transferase(Phosphotransferase); domain 1
(1379)
Homologous Superfamily
:
Transferase(Phosphotransferase) domain 1
(1379)
Human (Homo sapiens)
(1049)
3a
1oiyA02
A:85-295
3b
1oiyC02
C:85-295
[
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Pfam Domains
(3, 6)
Info
all PFAM domains
1a: PFAM_Cyclin_C_1oiyD01 (D:309-427)
1b: PFAM_Cyclin_C_1oiyD02 (D:309-427)
2a: PFAM_Cyclin_N_1oiyD03 (D:181-307)
2b: PFAM_Cyclin_N_1oiyD04 (D:181-307)
3a: PFAM_Pkinase_1oiyC01 (C:4-286)
3b: PFAM_Pkinase_1oiyC02 (C:4-286)
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Clans
(
)
(
)
Families
(
)
(
)
Organisms
(
)
(
)
Clan
:
Cyclin
(63)
Family
:
Cyclin_C
(40)
Homo sapiens (Human)
(36)
1a
Cyclin_C-1oiyD01
D:309-427
1b
Cyclin_C-1oiyD02
D:309-427
Family
:
Cyclin_N
(51)
Homo sapiens (Human)
(43)
2a
Cyclin_N-1oiyD03
D:181-307
2b
Cyclin_N-1oiyD04
D:181-307
Clan
:
PKinase
(934)
Family
:
Pkinase
(680)
Homo sapiens (Human)
(521)
3a
Pkinase-1oiyC01
C:4-286
3b
Pkinase-1oiyC02
C:4-286
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