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1OIV
Asym. Unit
Info
Asym.Unit (65 KB)
Biol.Unit 1 (60 KB)
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(1)
Title
:
X-RAY STRUCTURE OF THE SMALL G PROTEIN RAB11A IN COMPLEX WITH GDP
Authors
:
S. Pasqualato, F. Senic-Matuglia, L. Renault, B. Goud, J. Salamero, J. Cherfils
Date
:
26 Jun 03 (Deposition) - 08 Jan 04 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.98
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A,B (1x)
Keywords
:
Protein Transport, Small G Protein, Intracellular Trafficking, Gtp-Binding, Lipoprotein
(Keyword Search:
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Gene Ontology, PubMed, Web (Google)
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)
Reference
:
S. Pasqualato, F. Senic-Matuglia, L. Renault, B. Goud, J. Salamero, J. Cherfils
The Structural Gdp/Gtp Cycle Of Rab11 Reveals A Novel Interface Involved In The Dynamics Of Recycling Endosomes
J. Biol. Chem. V. 279 11480 2004
[
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Hetero Components
(3, 4)
Info
All Hetero Components
1a: 1,2-ETHANEDIOL (EDOa)
2a: GUANOSINE-5'-DIPHOSPHATE (GDPa)
2b: GUANOSINE-5'-DIPHOSPHATE (GDPb)
3a: SULFATE ION (SO4a)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
EDO
1
Ligand/Ion
1,2-ETHANEDIOL
2
GDP
2
Ligand/Ion
GUANOSINE-5'-DIPHOSPHATE
3
SO4
1
Ligand/Ion
SULFATE ION
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Sites
(4, 4)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
HOH A:2084 , ARG B:129 , ARG B:132 , HOH B:2086
BINDING SITE FOR RESIDUE SO4 A1175
2
AC2
SOFTWARE
SER A:20 , GLY A:21 , VAL A:22 , GLY A:23 , LYS A:24 , SER A:25 , ASN A:26 , PHE A:36 , ASN A:37 , LEU A:38 , SER A:40 , ASN A:124 , LYS A:125 , ASP A:127 , LEU A:128 , SER A:154 , ALA A:155 , LEU A:156 , HOH A:2080 , HOH A:2081 , HOH A:2083
BINDING SITE FOR RESIDUE GDP A1174
3
AC3
SOFTWARE
ASN A:116 , TYR B:99 , GLU B:100 , VAL B:102 , GLU B:103 , HOH B:2064
BINDING SITE FOR RESIDUE EDO B1174
4
AC4
SOFTWARE
GLU A:162 , HOH A:2037 , ASP B:19 , SER B:20 , GLY B:21 , VAL B:22 , GLY B:23 , LYS B:24 , SER B:25 , ASN B:26 , PHE B:36 , ASN B:37 , LEU B:38 , SER B:40 , SER B:42 , ASN B:124 , LYS B:125 , ASP B:127 , LEU B:128 , SER B:154 , ALA B:155 , LEU B:156 , HOH B:2105 , HOH B:2106 , HOH B:2107
BINDING SITE FOR RESIDUE GDP B1175
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
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Sorry, no Info available
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PROSITE Patterns/Profiles
(1, 2)
Info
All PROSITE Patterns/Profiles
1: RAB (A:7-173,B:7-173,A:7-173,B:7-173,A:...)
;
View:
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
RAB
PS51419
small GTPase Rab1 family profile.
RB11A_CANLF
7-213
2
A:7-173
B:7-173
RB11A_HUMAN
7-213
2
A:7-173
B:7-173
RB11A_MOUSE
7-213
2
A:7-173
B:7-173
RB11A_RABIT
7-213
2
A:7-173
B:7-173
RB11A_RAT
7-213
2
A:7-173
B:7-173
[
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Exons
(5, 10)
Info
All Exons
Exon 1.1 (A:6-14 | B:6-14)
Exon 1.2 (A:14-79 | B:14-79)
Exon 1.3 (A:79-144 | B:79-144)
Exon 1.4 (A:144-171 | B:144-171)
Exon 1.5 (A:171-173 | B:171-173)
View:
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All Exon Boundaries
1: Boundary -/1.1
2: Boundary 1.1/1.2
3: Boundary 1.2/1.3
4: Boundary 1.3/1.4
5: Boundary 1.4/1.5
6: Boundary 1.5/-
View:
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1
ENSRNOT00000015598
1
ENSRNOE00000242141
chr8:
68979514-68979410
105
RB11A_RAT
1-14
14
2
A:6-14
B:6-14
9
9
1.2
ENSRNOT00000015598
2
ENSRNOE00000298367
chr8:
68970068-68969873
196
RB11A_RAT
14-79
66
2
A:14-79
B:14-79
66
66
1.3
ENSRNOT00000015598
3
ENSRNOE00000107596
chr8:
68968355-68968162
194
RB11A_RAT
79-144
66
2
A:79-144
B:79-144
66
66
1.4
ENSRNOT00000015598
4
ENSRNOE00000108181
chr8:
68967160-68967080
81
RB11A_RAT
144-171
28
2
A:144-171
B:144-171
28
28
1.5
ENSRNOT00000015598
5
ENSRNOE00000242105
chr8:
68933610-68931925
1686
RB11A_RAT
171-216
46
2
A:171-173
B:171-173
3
3
[
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SCOP Domains
(1, 2)
Info
All SCOP Domains
1a: SCOP_d1oiva_ (A:)
1b: SCOP_d1oivb_ (B:)
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Protein Domains
(
)
(
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Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
P-loop containing nucleoside triphosphate hydrolases
(2083)
Superfamily
:
P-loop containing nucleoside triphosphate hydrolases
(2083)
Family
:
G proteins
(693)
Protein domain
:
Rab11a
(6)
Human (Homo sapiens) [TaxId: 9606]
(4)
1a
d1oiva_
A:
1b
d1oivb_
B:
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CATH Domains
(1, 2)
Info
all CATH domains
1a: CATH_1oivA00 (A:6-173)
1b: CATH_1oivB00 (B:6-173)
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Organisms
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Class
:
Alpha Beta
(26913)
Architecture
:
3-Layer(aba) Sandwich
(12045)
Topology
:
Rossmann fold
(7312)
Homologous Superfamily
:
P-loop containing nucleotide triphosphate hydrolases
(1378)
Human (Homo sapiens)
(413)
1a
1oivA00
A:6-173
1b
1oivB00
B:6-173
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Pfam Domains
(1, 2)
Info
all PFAM domains
1a: PFAM_Ras_1oivB01 (B:13-173)
1b: PFAM_Ras_1oivB02 (B:13-173)
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Clan
:
P-loop_NTPase
(1112)
Family
:
Ras
(176)
Homo sapiens (Human)
(141)
1a
Ras-1oivB01
B:13-173
1b
Ras-1oivB02
B:13-173
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Asymmetric Unit 1
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