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1OID
Asym. Unit
Info
Asym.Unit (188 KB)
Biol.Unit 1 (94 KB)
Biol.Unit 2 (92 KB)
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(1)
Title
:
5'-NUCLEOTIDASE (E. COLI) WITH AN ENGINEERED DISULFIDE BRIDGE (S228C, P513C)
Authors
:
R. Schultz-Heienbrok, T. Maier, N. Straeter
Date
:
13 Jun 03 (Deposition) - 10 Jun 04 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.10
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Keywords
:
Metalloprotein, Hydrolase, Domain Movement, Disulfide Engineering, Udp-Sugar Hydrolase, Conformational Trapping
(Keyword Search:
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Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
R. Schultz-Heienbrok, T. Maier, N. Straeter
Trapping A 96 Degree Domain Rotation In Two Distinct Conformations By Engineered Disulfide Bridges
Protein Sci. V. 13 1811 2004
(for further references see the
PDB file header
)
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Hetero Components
(1, 1)
Info
All Hetero Components
1a: NICKEL (II) ION (NIa)
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No.
Name
Count
Type
Full Name
1
NI
1
Ligand/Ion
NICKEL (II) ION
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Sites
(1, 1)
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All Sites
1: AC1 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
ASP A:84 , ASN A:116 , HIS A:217 , HIS A:252 , HOH A:2114 , HOH A:2238
BINDING SITE FOR RESIDUE NI A1551
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SAPs(SNPs)/Variants
(0, 0)
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(mutated residues are not available)
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PROSITE Patterns/Profiles
(2, 4)
Info
All PROSITE Patterns/Profiles
1: 5_NUCLEOTIDASE_1 (A:34-46,B:34-46)
2: 5_NUCLEOTIDASE_2 (A:109-120,B:109-120)
;
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PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
5_NUCLEOTIDASE_1
PS00785
5'-nucleotidase signature 1.
USHA_ECOLI
34-46
2
A:34-46
B:34-46
2
5_NUCLEOTIDASE_2
PS00786
5'-nucleotidase signature 2.
USHA_ECOLI
109-120
2
A:109-120
B:109-120
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Exons
(0, 0)
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Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(2, 4)
Info
All SCOP Domains
1a: SCOP_d1oida1 (A:363-550)
1b: SCOP_d1oidb1 (B:363-548)
2a: SCOP_d1oida2 (A:26-362)
2b: SCOP_d1oidb2 (B:26-362)
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Protein Domains
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Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
5'-nucleotidase (syn. UDP-sugar hydrolase), C-terminal domain
(10)
Superfamily
:
5'-nucleotidase (syn. UDP-sugar hydrolase), C-terminal domain
(10)
Family
:
5'-nucleotidase (syn. UDP-sugar hydrolase), C-terminal domain
(10)
Protein domain
:
5'-nucleotidase (syn. UDP-sugar hydrolase), C-terminal domain
(10)
Escherichia coli [TaxId: 562]
(8)
1a
d1oida1
A:363-550
1b
d1oidb1
B:363-548
Fold
:
Metallo-dependent phosphatases
(115)
Superfamily
:
Metallo-dependent phosphatases
(115)
Family
:
5'-nucleotidase (syn. UDP-sugar hydrolase), N-terminal domain
(10)
Protein domain
:
5'-nucleotidase (syn. UDP-sugar hydrolase), N-terminal domain
(10)
Escherichia coli [TaxId: 562]
(8)
2a
d1oida2
A:26-362
2b
d1oidb2
B:26-362
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CATH Domains
(2, 4)
Info
all CATH domains
1a: CATH_1oidA01 (A:26-362)
1b: CATH_1oidB01 (B:26-362)
2a: CATH_1oidB02 (B:363-548)
2b: CATH_1oidA02 (A:363-550)
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Organisms
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Class
:
Alpha Beta
(26913)
Architecture
:
4-Layer Sandwich
(459)
Topology
:
Purple Acid Phosphatase; chain A, domain 2
(87)
Homologous Superfamily
:
[code=3.60.21.10, no name defined]
(83)
Escherichia coli. Organism_taxid: 562.
(3)
1a
1oidA01
A:26-362
1b
1oidB01
B:26-362
Architecture
:
Alpha-Beta Complex
(3881)
Topology
:
5'-nucleotidase; domain 2
(9)
Homologous Superfamily
:
5'-nucleotidase; Domain 2
(9)
Escherichia coli. Organism_taxid: 562.
(3)
2a
1oidB02
B:363-548
2b
1oidA02
A:363-550
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Pfam Domains
(2, 4)
Info
all PFAM domains
1a: PFAM_Metallophos_1oidB01 (B:34-256)
1b: PFAM_Metallophos_1oidB02 (B:34-256)
2a: PFAM_5_nucleotid_C_1oidB03 (B:363-511)
2b: PFAM_5_nucleotid_C_1oidB04 (B:363-511)
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Clans
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Clan
:
Calcineurin
(56)
Family
:
Metallophos
(45)
Escherichia coli (strain K12)
(4)
1a
Metallophos-1oidB01
B:34-256
1b
Metallophos-1oidB02
B:34-256
Clan
:
no clan defined [family: 5_nucleotid_C]
(8)
Family
:
5_nucleotid_C
(8)
Escherichia coli (strain K12)
(4)
2a
5_nucleotid_C-1oidB03
B:363-511
2b
5_nucleotid_C-1oidB04
B:363-511
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Asym.Unit (188 KB)
Header - Asym.Unit
Biol.Unit 1 (94 KB)
Header - Biol.Unit 1
Biol.Unit 2 (92 KB)
Header - Biol.Unit 2
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