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Getting 'Exon' information from database.
1OIA
Asym. Unit
Info
Asym.Unit (37 KB)
Biol.Unit 1 (17 KB)
Biol.Unit 2 (16 KB)
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(1)
Title
:
U1A RNP DOMAIN 1-95
Authors
:
K. Nagai, P. R. Evans
Date
:
12 Jun 03 (Deposition) - 26 Jun 03 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.40
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Keywords
:
Ribonucleoprotein, Nuclear Protein, Rna-Binding
(Keyword Search:
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Gene Ontology, PubMed, Web (Google)
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)
Reference
:
K. Nagai, C. Oubridge, T. H. Jessen, J. Li, P. R. Evans
Crystal Structure Of The Rna-Binding Domain Of The U1 Small Nuclear Ribonucleoprotein A
Nature V. 348 515 1990
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Hetero Components
(0, 0)
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Sorry, no Info available
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Sites
(0, 0)
Info
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
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PROSITE Patterns/Profiles
(1, 2)
Info
All PROSITE Patterns/Profiles
1: RRM (A:10-89,B:10-89|-)
;
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
RRM
PS50102
Eukaryotic RNA Recognition Motif (RRM) profile.
SNRPA_HUMAN
10-89
208-282
2
A:10-89
B:10-89
-
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Exons
(3, 6)
Info
All Exons
Exon 1.1 (A:3-25 | B:6-25)
Exon 1.2 (A:25-82 | B:25-82)
Exon 1.3 (A:83-92 | B:83-91)
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All Exon Boundaries
1: Boundary -/1.1
2: Boundary 1.1/1.2
3: Boundary 1.2/1.3
4: Boundary 1.3/1.4
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1
ENST00000243563
1
ENSE00001052136
chr19:
41256779-41257386
608
SNRPA_HUMAN
1-25
25
2
A:3-25
B:6-25
23
20
1.2
ENST00000243563
2
ENSE00000707951
chr19:
41263237-41263409
173
SNRPA_HUMAN
25-82
58
2
A:25-82
B:25-82
58
58
1.3
ENST00000243563
3
ENSE00000707956
chr19:
41265336-41265515
180
SNRPA_HUMAN
83-142
60
2
A:83-92
B:83-91
10
9
1.4
ENST00000243563
4
ENSE00000707961
chr19:
41268806-41268979
174
SNRPA_HUMAN
143-200
58
0
-
-
1.5
ENST00000243563
5
ENSE00000842333
chr19:
41269492-41269580
89
SNRPA_HUMAN
201-230
30
0
-
-
1.6
ENST00000243563
6
ENSE00000842334
chr19:
41270913-41271290
378
SNRPA_HUMAN
230-282
53
0
-
-
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SCOP Domains
(1, 2)
Info
All SCOP Domains
1a: SCOP_d1oiaa_ (A:)
1b: SCOP_d1oiab_ (B:)
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Protein Domains
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Organisms
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(
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Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
Ferredoxin-like
(1795)
Superfamily
:
RNA-binding domain, RBD
(289)
Family
:
Canonical RBD
(214)
Protein domain
:
Splicesomal U1A protein
(46)
Human (Homo sapiens) [TaxId: 9606]
(43)
1a
d1oiaa_
A:
1b
d1oiab_
B:
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CATH Domains
(1, 2)
Info
all CATH domains
1a: CATH_1oiaA00 (A:3-92)
1b: CATH_1oiaB00 (B:6-91)
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Organisms
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)
(
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Class
:
Alpha Beta
(26913)
Architecture
:
2-Layer Sandwich
(8480)
Topology
:
Alpha-Beta Plaits
(1688)
Homologous Superfamily
:
[code=3.30.70.330, no name defined]
(307)
Human (Homo sapiens)
(81)
1a
1oiaA00
A:3-92
1b
1oiaB00
B:6-91
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Pfam Domains
(1, 2)
Info
all PFAM domains
1a: PFAM_RRM_1_1oiaB01 (B:12-83)
1b: PFAM_RRM_1_1oiaB02 (B:12-83)
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Clan
:
RRM
(206)
Family
:
RRM_1
(131)
Homo sapiens (Human)
(94)
1a
RRM_1-1oiaB01
B:12-83
1b
RRM_1-1oiaB02
B:12-83
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Asym.Unit (37 KB)
Header - Asym.Unit
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