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1OI8
Biol. Unit 1
Info
Asym.Unit (191 KB)
Biol.Unit 1 (95 KB)
Biol.Unit 2 (95 KB)
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(1)
Title
:
5'-NUCLEOTIDASE (E. COLI) WITH AN ENGINEERED DISULFIDE BRIDGE (P90C, L424C)
Authors
:
R. Schultz-Heienbrok, T. Maier, N. Straeter
Date
:
10 Jun 03 (Deposition) - 10 Jun 04 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.10
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Keywords
:
Metalloprotein, Hydrolase, Domain Movement, Disulfide Engineering, Udp-Sugar Hydrolase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
R. Schultz-Heienbrok, T. Maier, N. Straeter
Trapping A 96 Degree Domain Rotation In Two Distinct Conformations By Engineered Disulfide Bridges
Protein Sci. V. 13 1811 2004
(for further references see the
PDB file header
)
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Hetero Components
(2, 2)
Info
All Hetero Components
1a: CARBONATE ION (CO3a)
1b: CARBONATE ION (CO3b)
2a: MANGANESE (II) ION (MNa)
2b: MANGANESE (II) ION (MNb)
2c: MANGANESE (II) ION (MNc)
2d: MANGANESE (II) ION (MNd)
3a: SULFATE ION (SO4a)
3b: SULFATE ION (SO4b)
View:
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Label:
No.
Name
Count
Type
Full Name
1
CO3
1
Ligand/Ion
CARBONATE ION
2
MN
-1
Ligand/Ion
MANGANESE (II) ION
3
SO4
1
Ligand/Ion
SULFATE ION
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Sites
(4, 4)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
View:
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Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
ASP A:84 , ASN A:116 , HIS A:217 , HIS A:252 , MN A:1552 , CO3 A:1554
BINDING SITE FOR RESIDUE MN A1551
2
AC2
SOFTWARE
ASP A:41 , HIS A:43 , ASP A:84 , GLN A:254 , MN A:1551 , CO3 A:1554
BINDING SITE FOR RESIDUE MN A1552
3
AC3
SOFTWARE
ARG A:410 , PRO A:428 , PHE A:429 , HOH A:2381 , HOH A:2474
BINDING SITE FOR RESIDUE SO4 A1553
4
AC4
SOFTWARE
ASP A:41 , ASP A:84 , ASN A:116 , HIS A:117 , HIS A:217 , HIS A:252 , GLN A:254 , MN A:1551 , MN A:1552 , HOH A:2475
BINDING SITE FOR RESIDUE CO3 A1554
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SAPs(SNPs)/Variants
(0, 0)
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(mutated residues are only available for the asymmetric unit)
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PROSITE Patterns/Profiles
(2, 2)
Info
All PROSITE Patterns/Profiles
1: 5_NUCLEOTIDASE_1 (A:34-46)
2: 5_NUCLEOTIDASE_2 (A:109-120)
;
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
5_NUCLEOTIDASE_1
PS00785
5'-nucleotidase signature 1.
USHA_ECOLI
34-46
1
A:34-46
-
2
5_NUCLEOTIDASE_2
PS00786
5'-nucleotidase signature 2.
USHA_ECOLI
109-120
1
A:109-120
-
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Exons
(0, 0)
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Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(2, 4)
Info
All SCOP Domains
1a: SCOP_d1oi8a1 (A:363-550)
1b: SCOP_d1oi8b1 (B:363-550)
2a: SCOP_d1oi8a2 (A:26-362)
2b: SCOP_d1oi8b2 (B:26-362)
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)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
5'-nucleotidase (syn. UDP-sugar hydrolase), C-terminal domain
(10)
Superfamily
:
5'-nucleotidase (syn. UDP-sugar hydrolase), C-terminal domain
(10)
Family
:
5'-nucleotidase (syn. UDP-sugar hydrolase), C-terminal domain
(10)
Protein domain
:
5'-nucleotidase (syn. UDP-sugar hydrolase), C-terminal domain
(10)
Escherichia coli [TaxId: 562]
(8)
1a
d1oi8a1
A:363-550
1b
d1oi8b1
B:363-550
Fold
:
Metallo-dependent phosphatases
(115)
Superfamily
:
Metallo-dependent phosphatases
(115)
Family
:
5'-nucleotidase (syn. UDP-sugar hydrolase), N-terminal domain
(10)
Protein domain
:
5'-nucleotidase (syn. UDP-sugar hydrolase), N-terminal domain
(10)
Escherichia coli [TaxId: 562]
(8)
2a
d1oi8a2
A:26-362
2b
d1oi8b2
B:26-362
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CATH Domains
(2, 4)
Info
all CATH domains
1a: CATH_1oi8A01 (A:26-362)
1b: CATH_1oi8B01 (B:26-362)
2a: CATH_1oi8A02 (A:363-549)
2b: CATH_1oi8B02 (B:363-549)
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)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
4-Layer Sandwich
(459)
Topology
:
Purple Acid Phosphatase; chain A, domain 2
(87)
Homologous Superfamily
:
[code=3.60.21.10, no name defined]
(83)
Escherichia coli. Organism_taxid: 562.
(3)
1a
1oi8A01
A:26-362
1b
1oi8B01
B:26-362
Architecture
:
Alpha-Beta Complex
(3881)
Topology
:
5'-nucleotidase; domain 2
(9)
Homologous Superfamily
:
5'-nucleotidase; Domain 2
(9)
Escherichia coli. Organism_taxid: 562.
(3)
2a
1oi8A02
A:363-549
2b
1oi8B02
B:363-549
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Pfam Domains
(2, 4)
Info
all PFAM domains
1a: PFAM_Metallophos_1oi8B01 (B:34-256)
1b: PFAM_Metallophos_1oi8B02 (B:34-256)
2a: PFAM_5_nucleotid_C_1oi8B03 (B:363-511)
2b: PFAM_5_nucleotid_C_1oi8B04 (B:363-511)
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Clans
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)
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)
Clan
:
Calcineurin
(56)
Family
:
Metallophos
(45)
Escherichia coli (strain K12)
(4)
1a
Metallophos-1oi8B01
B:34-256
1b
Metallophos-1oi8B02
B:34-256
Clan
:
no clan defined [family: 5_nucleotid_C]
(8)
Family
:
5_nucleotid_C
(8)
Escherichia coli (strain K12)
(4)
2a
5_nucleotid_C-1oi8B03
B:363-511
2b
5_nucleotid_C-1oi8B04
B:363-511
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Chain A
Asymmetric Unit 1
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Show PDB file:
Asym.Unit (191 KB)
Header - Asym.Unit
Biol.Unit 1 (95 KB)
Header - Biol.Unit 1
Biol.Unit 2 (95 KB)
Header - Biol.Unit 2
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