PLEASE WAIT...
Getting 'Biological Unit' information from database.
PLEASE WAIT...
Getting 'Hetero Component' information from database.
PLEASE WAIT...
Getting 'Site' information from database.
PLEASE WAIT...
No precomputed SNP/Variant structure found.
Calculating the structure may take several minutes.
PLEASE WAIT...
Getting 'PROSITE' information from database.
PLEASE WAIT...
Getting 'Exon' information from database.
1OI1
Asym. Unit
Info
Asym.Unit (44 KB)
Biol.Unit 1 (40 KB)
(using Jmol or JSmol)
spin
show selected part
auto zoom/center
Standard Views
(
Basic
|
Advanced
Interface
)
(
Basic
|
Advanced
Interface
)
Help
(1)
Title
:
CRYSTAL STRUCTURE OF THE MBT DOMAINS OF HUMAN SCML2
Authors
:
A. Sathyamurthy, M. D. Allen, A. G. Murzin, M. Bycroft
Date
:
04 Jun 03 (Deposition) - 15 Jun 03 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.78
Chains
:
Asym. Unit : A
Biol. Unit 1: A (1x)
Keywords
:
Mbt, Scml2, Crystal Structure
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
A. Sathyamurthy, M. D. Allen, A. G. Murzin, M. Bycroft
Crystal Structure Of The Malignant Brain Tumor (Mbt) Repeats In Sex Comb On Midleg-Like 2 (Scml2).
J. Biol. Chem. V. 278 46968 2003
[
close entry info
]
Hetero Components
(1, 1)
Info
All Hetero Components
1a: DI(HYDROXYETHYL)ETHER (PEGa)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
PEG
1
Ligand/Ion
DI(HYDROXYETHYL)ETHER
[
close Hetero Component info
]
Sites
(1, 1)
Info
All Sites
1: AC1 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
ASP A:62 , THR A:158 , LEU A:159 , LYS A:161 , HOH A:2308
BINDING SITE FOR RESIDUE PEG A1244
[
close Site info
]
SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
View:
Select:
Label:
Sorry, no Info available
[
close SNP/Variant info
]
PROSITE Patterns/Profiles
(1, 2)
Info
All PROSITE Patterns/Profiles
1: MBT (A:33-131|A:140-240)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
MBT
PS51079
MBT repeat profile.
SCML2_HUMAN
33-131
139-240
2
A:33-131
A:140-240
[
close PROSITE info
]
Exons
(4, 4)
Info
All Exons
Exon 1.4 (A:33-54)
Exon 1.5 (A:55-133)
Exon 1.6 (A:133-162 (gaps))
Exon 1.7 (A:163-243)
View:
Select:
Label:
All Exon Boundaries
1: Boundary 1.3/1.4
2: Boundary 1.4/1.5
3: Boundary 1.5/1.6
4: Boundary 1.6/1.7
5: Boundary 1.7/1.8
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1a
ENST00000251900
1a
ENSE00001341544
X:18372847-18372712
136
SCML2_HUMAN
-
0
0
-
-
1.2
ENST00000251900
2
ENSE00002195410
X:18352215-18352170
46
SCML2_HUMAN
1-8
8
0
-
-
1.3
ENST00000251900
3
ENSE00001740872
X:18348775-18348707
69
SCML2_HUMAN
8-31
24
0
-
-
1.4
ENST00000251900
4
ENSE00001722015
X:18343097-18343027
71
SCML2_HUMAN
31-54
24
1
A:33-54
22
1.5
ENST00000251900
5
ENSE00001761590
X:18342213-18341979
235
SCML2_HUMAN
55-133
79
1
A:55-133
79
1.6
ENST00000251900
6
ENSE00001802908
X:18338540-18338452
89
SCML2_HUMAN
133-162
30
1
A:133-162 (gaps)
30
1.7
ENST00000251900
7
ENSE00001780951
X:18323335-18323092
244
SCML2_HUMAN
163-244
82
1
A:163-243
81
1.8
ENST00000251900
8
ENSE00001602863
X:18283922-18283705
218
SCML2_HUMAN
244-316
73
0
-
-
1.9
ENST00000251900
9
ENSE00001692459
X:18278411-18278291
121
SCML2_HUMAN
317-357
41
0
-
-
1.10
ENST00000251900
10
ENSE00001801055
X:18276367-18276164
204
SCML2_HUMAN
357-425
69
0
-
-
1.11
ENST00000251900
11
ENSE00001720943
X:18275150-18274968
183
SCML2_HUMAN
425-486
62
0
-
-
1.12b
ENST00000251900
12b
ENSE00001776891
X:18266002-18265889
114
SCML2_HUMAN
486-524
39
0
-
-
1.13
ENST00000251900
13
ENSE00001632032
X:18264948-18264697
252
SCML2_HUMAN
524-608
85
0
-
-
1.14
ENST00000251900
14
ENSE00000666137
X:18260710-18260559
152
SCML2_HUMAN
608-658
51
0
-
-
1.15b
ENST00000251900
15b
ENSE00001765000
X:18259499-18257434
2066
SCML2_HUMAN
659-700
42
0
-
-
[
close EXON info
]
SCOP Domains
(1, 2)
Info
All SCOP Domains
1a: SCOP_d1oi1a1 (A:33-135)
1b: SCOP_d1oi1a2 (A:140-243)
View:
Select:
Label:
Classes
(
)
(
)
Folds
(
)
(
)
Superfamilies
(
)
(
)
Families
(
)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All beta proteins
(24004)
Fold
:
SH3-like barrel
(1035)
Superfamily
:
Tudor/PWWP/MBT
(72)
Family
:
MBT repeat
(8)
Protein domain
:
Scml2 protein
(2)
Human (Homo sapiens) [TaxId: 9606]
(2)
1a
d1oi1a1
A:33-135
1b
d1oi1a2
A:140-243
[
close SCOP info
]
CATH Domains
(1, 2)
Info
all CATH domains
1a: CATH_1oi1A02 (A:59-162)
1b: CATH_1oi1A01 (A:33-58,A:163-243)
View:
Select:
Label:
Classes
(
)
(
)
Architectures
(
)
(
)
Topologies
(
)
(
)
Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Mainly Beta
(13760)
Architecture
:
Roll
(1513)
Topology
:
SH3 type barrels.
(648)
Homologous Superfamily
:
[code=2.30.30.160, no name defined]
(35)
Human (Homo sapiens)
(27)
1a
1oi1A02
A:59-162
1b
1oi1A01
A:33-58,A:163-243
[
close CATH info
]
Pfam Domains
(1, 2)
Info
all PFAM domains
1a: PFAM_MBT_1oi1A01 (A:176-243)
1b: PFAM_MBT_1oi1A02 (A:176-243)
View:
Select:
Label:
Clans
(
)
(
)
Families
(
)
(
)
Organisms
(
)
(
)
Clan
:
Tudor
(88)
Family
:
MBT
(24)
Homo sapiens (Human)
(20)
1a
MBT-1oi1A01
A:176-243
1b
MBT-1oi1A02
A:176-243
[
close Pfam info
]
Atom Selection
(currently selected atoms:
all
)
Protein
Nucleic
Backbone
Sidechain
Hetero
Ligand
Solvent
All Atoms
Protein & NOT Variant
Protein & NOT Site
Protein & NOT PROSITE
Chain A
Asymmetric Unit 1
Rendering
(selected part)
Molecule Coloring
(selected part)
by Chain (Asym. Unit)
by Chain (Biol. Unit)
by Secondary Structure
by Atom (CPK)
by SCOP Domain
by CATH Domain
by Pfam Domain
by Asymmetric Unit
by Exon
by Amino Acid
by Nucleotide
by Temperature
by Charge
by Rainbow (Group)
by Custom Color
Background Coloring
Choose
molecule
background
color...
[
close
]
RGB value
(e.g.: "#3cb371" or "60,179,113")
Stereo
Graphics Window
x
pixel
Miscellaneous
Script
Example Commands
Example Command
Action
select :A, :C
select chains 'A' and 'C'
select [ALA]:A
select all 'ALA' residues (Alanines) in chain 'A'
select 5-10
select residue range 5 to 10 in all chains
select 5-10:A
select residue range 5 to 10 in chain 'A'
select protein & not helix & not sheet
select non-helix/non-sheet protein parts
set fontsize 20
set label size to 20 (allowed range: 1-58)
ssbonds 100
show SS bonds with a radius of 100 units (=0.4Å)
wireframe 100
show bonds with a radius of 100 units (=0.4Å)
[
close Script example commands
]
Log
Note:
In this "Basic Interface" any change in the selection of a pulldown menu automatically triggers an action (one-step mechanism).
View and selection are coupled in the structure specific controls (e.g. "Hetero","PROSITE") .
Note:
In this "Advanced Interface" any change in the selection of a pulldown menu only sets the target for the corresponding control buttons (two-step mechanism).
View and selection are set independently in the structure specific controls (e.g. "Hetero","PROSITE") .
QuickSearch:
by PDB,NDB,UniProt,PROSITE Code or
Search Term(s)
Show PDB file:
Asym.Unit (44 KB)
Header - Asym.Unit
Biol.Unit 1 (40 KB)
Header - Biol.Unit 1
Plain Text
HTML (compressed size)
use JSmol [Javascript]
use Jmol [Java applet]
Upload:
Select a local file
OR
Enter a remote file address
You can upload any molecular structure file format that is recognized by Jmol,
e.g.: PDB, mmCif, CIF, CML, MOL, XYZ
(also compressed with 'gzip', see the
Jmol documentation
for a complete list)
JenaLib Atlas Page
|
Sequence/Alignment View
1OI1
Jmol Script Commands
|
Jmol Color Schemes
|
Jmol Mouse Manual
|
Jmol Wiki
controls:
collapse
expand
Home
JenaLib
Jmol Scripting
Contact
Help