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1OHW
Asym. Unit
Info
Asym.Unit (305 KB)
Biol.Unit 1 (151 KB)
Biol.Unit 2 (152 KB)
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(1)
Title
:
4-AMINOBUTYRATE-AMINOTRANSFERASE INACTIVATED BY GAMMA-VINYL GABA
Authors
:
P. Storici, T. Schirmer
Date
:
03 Jun 03 (Deposition) - 16 Oct 03 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.30
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A,B (1x)
Biol. Unit 2: C,D (1x)
Keywords
:
Transferase, Plp-Dependent Enzyme, Aminotransferase, 4- Aminobutyric Acid, Antiepileptic Drug Target, Vigabatrin Pyridoxal Phosphate, Neurotransmitter Degradation, Mitochondrion, Transit Peptide
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
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)
Reference
:
P. Storici, D. De Biase, F. Bossa, S. Bruno, A. Mozzarelli, C. Peneff, R. Silverman, T. Schirmer
Structures Of {Gamma}-Aminobutyric Acid (Gaba) Aminotransferase, A Pyridoxal 5'-Phosphate, And [2Fe-2S] Cluster-Containing Enzyme, Complexed With {Gamma}-Ethynyl-Gaba And With The Antiepilepsy Drug Vigabatrin
J. Biol. Chem. V. 279 363 2004
(for further references see the
PDB file header
)
[
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Hetero Components
(3, 10)
Info
All Hetero Components
1a: FE2/S2 (INORGANIC) CLUSTER (FESa)
1b: FE2/S2 (INORGANIC) CLUSTER (FESb)
2a: PYRIDOXAL-5'-PHOSPHATE (PLPa)
2b: PYRIDOXAL-5'-PHOSPHATE (PLPb)
2c: PYRIDOXAL-5'-PHOSPHATE (PLPc)
2d: PYRIDOXAL-5'-PHOSPHATE (PLPd)
3a: 4-AMINO HEXANOIC ACID (VIGa)
3b: 4-AMINO HEXANOIC ACID (VIGb)
3c: 4-AMINO HEXANOIC ACID (VIGc)
3d: 4-AMINO HEXANOIC ACID (VIGd)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
FES
2
Ligand/Ion
FE2/S2 (INORGANIC) CLUSTER
2
PLP
4
Ligand/Ion
PYRIDOXAL-5'-PHOSPHATE
3
VIG
4
Ligand/Ion
4-AMINO HEXANOIC ACID
[
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]
Sites
(10, 10)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
View:
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Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
ALA A:134 , CYS A:135 , CYS A:138 , ALA B:134 , CYS B:135 , CYS B:138
BINDING SITE FOR RESIDUE FES A 800
02
AC2
SOFTWARE
ALA C:134 , CYS C:135 , CYS C:138 , ALA D:134 , CYS D:135 , CYS D:138
BINDING SITE FOR RESIDUE FES C 800
03
AC3
SOFTWARE
CYS A:135 , GLY A:136 , SER A:137 , ASN A:140 , PHE A:189 , HIS A:190 , GLU A:265 , ASP A:298 , VAL A:300 , GLN A:301 , LYS A:329 , VIG A:700 , HOH A:2168 , HOH A:2169 , HOH A:2170 , HOH A:2171 , HOH A:2172 , THR B:353
BINDING SITE FOR RESIDUE PLP A 600
04
AC4
SOFTWARE
ILE A:72 , PHE A:189 , ARG A:192 , GLU A:270 , GLN A:301 , LYS A:329 , PLP A:600 , HOH A:2172 , PHE B:351 , ASN B:352 , THR B:353
BINDING SITE FOR RESIDUE VIG A 700
05
AC5
SOFTWARE
THR A:353 , CYS B:135 , GLY B:136 , SER B:137 , ASN B:140 , PHE B:189 , HIS B:190 , GLY B:191 , GLU B:265 , ASP B:298 , VAL B:300 , GLN B:301 , VIG B:700 , HOH B:2047 , HOH B:2164 , HOH B:2165 , HOH B:2166 , HOH B:2167
BINDING SITE FOR RESIDUE PLP B 600
06
AC6
SOFTWARE
PHE A:351 , ASN A:352 , THR A:353 , ILE B:72 , PHE B:189 , ARG B:192 , GLU B:270 , GLN B:301 , LYS B:329 , PLP B:600
BINDING SITE FOR RESIDUE VIG B 700
07
AC7
SOFTWARE
CYS C:135 , GLY C:136 , SER C:137 , ASN C:140 , PHE C:189 , HIS C:190 , GLU C:265 , ASP C:298 , VAL C:300 , GLN C:301 , VIG C:700 , HOH C:2173 , HOH C:2174 , HOH C:2175 , HOH C:2176 , HOH C:2177 , THR D:353
BINDING SITE FOR RESIDUE PLP C 600
08
AC8
SOFTWARE
ILE C:72 , PHE C:189 , ARG C:192 , GLU C:270 , GLN C:301 , LYS C:329 , PLP C:600 , HOH C:2177 , PHE D:351 , ASN D:352 , THR D:353
BINDING SITE FOR RESIDUE VIG C 700
09
AC9
SOFTWARE
THR C:353 , CYS D:135 , GLY D:136 , SER D:137 , ASN D:140 , PHE D:189 , HIS D:190 , GLY D:191 , GLU D:265 , ASP D:298 , VAL D:300 , GLN D:301 , VIG D:700 , HOH D:2196 , HOH D:2197 , HOH D:2198 , HOH D:2199 , HOH D:2200
BINDING SITE FOR RESIDUE PLP D 600
10
BC1
SOFTWARE
PHE C:351 , ASN C:352 , THR C:353 , ILE D:72 , PHE D:189 , ARG D:192 , GLU D:270 , GLN D:301 , LYS D:329 , PLP D:600 , HOH D:2200
BINDING SITE FOR RESIDUE VIG D 700
[
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
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PROSITE Patterns/Profiles
(1, 4)
Info
All PROSITE Patterns/Profiles
1: AA_TRANSFER_CLASS_3 (A:295-334,B:295-334,C:295-334,D:29...)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
AA_TRANSFER_CLASS_3
PS00600
Aminotransferases class-III pyridoxal-phosphate attachment site.
GABT_PIG
323-362
4
A:295-334
B:295-334
C:295-334
D:295-334
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Exons
(0, 0)
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(1, 4)
Info
All SCOP Domains
1a: SCOP_d1ohwa_ (A:)
1b: SCOP_d1ohwb_ (B:)
1c: SCOP_d1ohwc_ (C:)
1d: SCOP_d1ohwd_ (D:)
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Protein Domains
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Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
PLP-dependent transferase-like
(627)
Superfamily
:
PLP-dependent transferases
(625)
Family
:
GABA-aminotransferase-like
(167)
Protein domain
:
4-aminobutyrate aminotransferase, GABA-aminotransferase
(8)
Pig (Sus scrofa) [TaxId: 9823]
(3)
1a
d1ohwa_
A:
1b
d1ohwb_
B:
1c
d1ohwc_
C:
1d
d1ohwd_
D:
[
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CATH Domains
(2, 8)
Info
all CATH domains
1a: CATH_1ohwA02 (A:81-375)
1b: CATH_1ohwB02 (B:81-375)
1c: CATH_1ohwC02 (C:81-375)
1d: CATH_1ohwD02 (D:81-375)
2a: CATH_1ohwA01 (A:11-80,A:376-471)
2b: CATH_1ohwB01 (B:11-80,B:376-471)
2c: CATH_1ohwC01 (C:11-80,C:376-471)
2d: CATH_1ohwD01 (D:11-80,D:376-471)
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)
(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
3-Layer(aba) Sandwich
(12045)
Topology
:
Aspartate Aminotransferase; domain 2
(384)
Homologous Superfamily
:
Type I PLP-dependent aspartate aminotransferase-like (Major domain)
(384)
Pig (Sus scrofa)
(7)
1a
1ohwA02
A:81-375
1b
1ohwB02
B:81-375
1c
1ohwC02
C:81-375
1d
1ohwD02
D:81-375
Architecture
:
Alpha-Beta Complex
(3881)
Topology
:
Aspartate Aminotransferase, domain 1
(355)
Homologous Superfamily
:
Aspartate Aminotransferase, domain 1
(354)
Pig (Sus scrofa)
(7)
2a
1ohwA01
A:11-80,A:376-471
2b
1ohwB01
B:11-80,B:376-471
2c
1ohwC01
C:11-80,C:376-471
2d
1ohwD01
D:11-80,D:376-471
[
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Pfam Domains
(1, 4)
Info
all PFAM domains
1a: PFAM_Aminotran_3_1ohwD01 (D:48-418)
1b: PFAM_Aminotran_3_1ohwD02 (D:48-418)
1c: PFAM_Aminotran_3_1ohwD03 (D:48-418)
1d: PFAM_Aminotran_3_1ohwD04 (D:48-418)
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Clans
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Organisms
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)
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)
Clan
:
PLP_aminotran
(240)
Family
:
Aminotran_3
(44)
Sus scrofa (Pig)
(3)
1a
Aminotran_3-1ohwD01
D:48-418
1b
Aminotran_3-1ohwD02
D:48-418
1c
Aminotran_3-1ohwD03
D:48-418
1d
Aminotran_3-1ohwD04
D:48-418
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