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1OHV
Biol. Unit 1
Info
Asym.Unit (308 KB)
Biol.Unit 1 (153 KB)
Biol.Unit 2 (153 KB)
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(1)
Title
:
4-AMINOBUTYRATE-AMINOTRANSFERASE FROM PIG
Authors
:
P. Storici, T. Schirmer
Date
:
02 Jun 03 (Deposition) - 16 Oct 03 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.30
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A,B (1x)
Biol. Unit 2: C,D (1x)
Keywords
:
Transferase, Plp-Dependent Enzyme, Aminotransferase, 4- Aminobutyric Acid, Antiepileptic Drug Target
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
P. Storici, D. De Biase, F. Bossa, S. Bruno, A. Mozzarelli, C. Peneff, R. Silverman, T. Schirmer
Structures Of {Gamma}-Aminobutyric Acid (Gaba) Aminotransferase, A Pyridoxal 5'-Phosphate, And [2Fe-2S] Cluster-Containing Enzyme, Complexed With {Gamma}-Ethynyl-Gaba And With The Antiepilepsy Drug Vigabatrin
J. Biol. Chem. V. 279 363 2004
(for further references see the
PDB file header
)
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Hetero Components
(3, 5)
Info
All Hetero Components
1a: ACETATE ION (ACTa)
1b: ACETATE ION (ACTb)
1c: ACETATE ION (ACTc)
1d: ACETATE ION (ACTd)
2a: FE2/S2 (INORGANIC) CLUSTER (FESa)
2b: FE2/S2 (INORGANIC) CLUSTER (FESb)
3a: PYRIDOXAL-5'-PHOSPHATE (PLPa)
3b: PYRIDOXAL-5'-PHOSPHATE (PLPb)
3c: PYRIDOXAL-5'-PHOSPHATE (PLPc)
3d: PYRIDOXAL-5'-PHOSPHATE (PLPd)
View:
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Label:
No.
Name
Count
Type
Full Name
1
ACT
2
Ligand/Ion
ACETATE ION
2
FES
1
Ligand/Ion
FE2/S2 (INORGANIC) CLUSTER
3
PLP
2
Ligand/Ion
PYRIDOXAL-5'-PHOSPHATE
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Sites
(5, 5)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC7 (SOFTWARE)
5: AC8 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
PHE A:189 , ARG A:192 , HOH A:2166 , PHE B:351 , ASN B:352
BINDING SITE FOR RESIDUE ACT A 500
2
AC2
SOFTWARE
ALA A:134 , CYS A:135 , CYS A:138 , ALA B:134 , CYS B:135 , CYS B:138
BINDING SITE FOR RESIDUE FES A 800
3
AC3
SOFTWARE
PHE A:351 , ASN A:352 , PHE B:189 , ARG B:192 , HOH B:2145
BINDING SITE FOR RESIDUE ACT B 500
4
AC7
SOFTWARE
CYS A:135 , GLY A:136 , SER A:137 , ASN A:140 , PHE A:189 , HIS A:190 , GLY A:191 , GLU A:265 , ASP A:298 , VAL A:300 , GLN A:301 , LYS A:329 , HOH A:2095 , HOH A:2164 , HOH A:2165 , HOH A:2166 , HOH A:2167 , ASN B:352 , THR B:353
BINDING SITE FOR RESIDUE PLP A 600
5
AC8
SOFTWARE
ASN A:352 , THR A:353 , CYS B:135 , GLY B:136 , SER B:137 , PHE B:189 , HIS B:190 , GLU B:265 , ASP B:298 , VAL B:300 , GLN B:301 , LYS B:329 , HOH B:2144 , HOH B:2145 , HOH B:2146 , HOH B:2147
BINDING SITE FOR RESIDUE PLP B 600
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SAPs(SNPs)/Variants
(0, 0)
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(mutated residues are only available for the asymmetric unit)
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PROSITE Patterns/Profiles
(1, 2)
Info
All PROSITE Patterns/Profiles
1: AA_TRANSFER_CLASS_3 (A:295-334,B:295-334)
;
View:
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
AA_TRANSFER_CLASS_3
PS00600
Aminotransferases class-III pyridoxal-phosphate attachment site.
GABT_PIG
323-362
2
A:295-334
B:295-334
-
-
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Exons
(0, 0)
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Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(1, 4)
Info
All SCOP Domains
1a: SCOP_d1ohva_ (A:)
1b: SCOP_d1ohvb_ (B:)
1c: SCOP_d1ohvc_ (C:)
1d: SCOP_d1ohvd_ (D:)
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Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
PLP-dependent transferase-like
(627)
Superfamily
:
PLP-dependent transferases
(625)
Family
:
GABA-aminotransferase-like
(167)
Protein domain
:
4-aminobutyrate aminotransferase, GABA-aminotransferase
(8)
Pig (Sus scrofa) [TaxId: 9823]
(3)
1a
d1ohva_
A:
1b
d1ohvb_
B:
1c
d1ohvc_
C:
1d
d1ohvd_
D:
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CATH Domains
(2, 8)
Info
all CATH domains
1a: CATH_1ohvA02 (A:81-375)
1b: CATH_1ohvC02 (C:81-375)
1c: CATH_1ohvD02 (D:81-375)
1d: CATH_1ohvB02 (B:81-375)
2a: CATH_1ohvA01 (A:11-80,A:376-471)
2b: CATH_1ohvC01 (C:11-80,C:376-471)
2c: CATH_1ohvD01 (D:11-80,D:376-471)
2d: CATH_1ohvB01 (B:11-80,B:376-471)
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Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
3-Layer(aba) Sandwich
(12045)
Topology
:
Aspartate Aminotransferase; domain 2
(384)
Homologous Superfamily
:
Type I PLP-dependent aspartate aminotransferase-like (Major domain)
(384)
Pig (Sus scrofa)
(7)
1a
1ohvA02
A:81-375
1b
1ohvC02
C:81-375
1c
1ohvD02
D:81-375
1d
1ohvB02
B:81-375
Architecture
:
Alpha-Beta Complex
(3881)
Topology
:
Aspartate Aminotransferase, domain 1
(355)
Homologous Superfamily
:
Aspartate Aminotransferase, domain 1
(354)
Pig (Sus scrofa)
(7)
2a
1ohvA01
A:11-80,A:376-471
2b
1ohvC01
C:11-80,C:376-471
2c
1ohvD01
D:11-80,D:376-471
2d
1ohvB01
B:11-80,B:376-471
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Pfam Domains
(1, 4)
Info
all PFAM domains
1a: PFAM_Aminotran_3_1ohvD01 (D:48-418)
1b: PFAM_Aminotran_3_1ohvD02 (D:48-418)
1c: PFAM_Aminotran_3_1ohvD03 (D:48-418)
1d: PFAM_Aminotran_3_1ohvD04 (D:48-418)
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Clans
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Clan
:
PLP_aminotran
(240)
Family
:
Aminotran_3
(44)
Sus scrofa (Pig)
(3)
1a
Aminotran_3-1ohvD01
D:48-418
1b
Aminotran_3-1ohvD02
D:48-418
1c
Aminotran_3-1ohvD03
D:48-418
1d
Aminotran_3-1ohvD04
D:48-418
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Asym.Unit (308 KB)
Header - Asym.Unit
Biol.Unit 1 (153 KB)
Header - Biol.Unit 1
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