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1OHH
Biol. Unit 1
Info
Asym.Unit (933 KB)
Biol.Unit 1 (463 KB)
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Models
(2 )
Title
:
BOVINE MITOCHONDRIAL F1-ATPASE COMPLEXED WITH THE INHIBITOR PROTEIN IF1
Authors
:
E. Cabezon, M. G. Montgomery, A. G. W. Leslie, J. E. Walker
Date
:
27 May 03 (Deposition) - 09 Jun 03 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.80
Chains
:
Asym. Unit : A,B,C,D,E,F,G,H (2 x)
Biol. Unit 1: A,B,C,D,E,F,G,H (1x)
Keywords
:
Synthase, Atp Phosphorylase, Atp Phosphorylase (H+ Transporting), Atp Synthase, F1Fo Atp Synthase, F1-Atpase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
E. Cabezon, M. G. Montgomery, A. G. W. Leslie, J. E. Walker
The Structure Of Bovine F1-Atpase In Complex With Its Regulatory Protein If1
Nat. Struct. Biol. V. 10 744 2003
(for further references see the
PDB file header
)
[
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Hetero Components
(1, 5)
Info
All Hetero Components
1a: PHOSPHOAMINOPHOSPHONIC ACID-ADENYL... (ANPa)
1b: PHOSPHOAMINOPHOSPHONIC ACID-ADENYL... (ANPb)
1c: PHOSPHOAMINOPHOSPHONIC ACID-ADENYL... (ANPc)
1d: PHOSPHOAMINOPHOSPHONIC ACID-ADENYL... (ANPd)
1e: PHOSPHOAMINOPHOSPHONIC ACID-ADENYL... (ANPe)
2a: MAGNESIUM ION (MGa)
2b: MAGNESIUM ION (MGb)
2c: MAGNESIUM ION (MGc)
2d: MAGNESIUM ION (MGd)
2e: MAGNESIUM ION (MGe)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
ANP
5
Ligand/Ion
PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER
2
MG
-1
Ligand/Ion
MAGNESIUM ION
[
close Hetero Component info
]
Sites
(10, 10)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
THR A:176 , ANP A:1511
BINDING SITE FOR RESIDUE MG A1512
02
AC2
SOFTWARE
THR B:176 , ASP B:269 , ANP B:1511
BINDING SITE FOR RESIDUE MG B1512
03
AC3
SOFTWARE
THR C:176 , ANP C:1511
BINDING SITE FOR RESIDUE MG C1512
04
AC4
SOFTWARE
THR D:163 , GLU D:188 , GLU D:192 , ANP D:1478
BINDING SITE FOR RESIDUE MG D1479
05
AC5
SOFTWARE
THR F:163 , GLU F:188 , ANP F:1478
BINDING SITE FOR RESIDUE MG F1479
06
AC6
SOFTWARE
ARG A:171 , GLN A:172 , THR A:173 , GLY A:174 , LYS A:175 , THR A:176 , SER A:177 , PHE A:357 , GLN A:430 , GLN A:432 , MG A:1512
BINDING SITE FOR RESIDUE ANP A1511
07
AC7
SOFTWARE
GLN B:172 , THR B:173 , GLY B:174 , LYS B:175 , THR B:176 , SER B:177 , PHE B:357 , ARG B:362 , GLN B:430 , GLY B:431 , GLN B:432 , MG B:1512 , ASP E:359
BINDING SITE FOR RESIDUE ANP B1511
08
AC8
SOFTWARE
GLN C:172 , THR C:173 , GLY C:174 , LYS C:175 , THR C:176 , SER C:177 , PHE C:357 , ARG C:362 , PRO C:363 , MG C:1512 , TYR F:368
BINDING SITE FOR RESIDUE ANP C1511
09
AC9
SOFTWARE
ARG C:373 , ALA D:158 , GLY D:159 , VAL D:160 , GLY D:161 , LYS D:162 , THR D:163 , VAL D:164 , GLU D:188 , ARG D:189 , TYR D:345 , PHE D:424 , MG D:1479
BINDING SITE FOR RESIDUE ANP D1478
10
BC1
SOFTWARE
SER B:344 , VAL B:371 , ARG B:373 , ALA F:158 , GLY F:159 , VAL F:160 , GLY F:161 , LYS F:162 , THR F:163 , VAL F:164 , GLU F:188 , ARG F:189 , TYR F:345 , ALA F:421 , PHE F:424 , THR F:425 , MG F:1479
BINDING SITE FOR RESIDUE ANP F1478
[
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are only available for the asymmetric unit)
All SNPs/Variants
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Sorry, no Info available
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PROSITE Patterns/Profiles
(2, 7)
Info
All PROSITE Patterns/Profiles
1: ATPASE_GAMMA (G:258-271)
2: ATPASE_ALPHA_BETA (D:346-355,E:346-355,F:346-355)
;
View:
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
ATPASE_GAMMA
PS00153
ATP synthase gamma subunit signature.
ATPG_BOVIN
283-296
1
G:258-271
2
ATPASE_ALPHA_BETA
PS00152
ATP synthase alpha and beta subunits signature.
ATPB_BOVIN
396-405
3
D:346-355
E:346-355
F:346-355
ATPA_BOVIN
406-415
3
A:363-372
B:363-372
C:363-372
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Exons
(0, 0)
Info
All Exons
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All Exon Boundaries
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(8, 20)
Info
All SCOP Domains
1a: SCOP_d1ohha1 (A:380-510)
1b: SCOP_d1ohhb1 (B:380-510)
1c: SCOP_d1ohhc1 (C:380-510)
2a: SCOP_d1ohhd1 (D:358-477)
2b: SCOP_d1ohhe1 (E:358-474)
2c: SCOP_d1ohhf1 (F:358-474)
3a: SCOP_d1ohha2 (A:24-94)
3b: SCOP_d1ohhb2 (B:24-94)
3c: SCOP_d1ohhc2 (C:19-94)
4a: SCOP_d1ohhd2 (D:9-81)
4b: SCOP_d1ohhe2 (E:9-81)
4c: SCOP_d1ohhf2 (F:9-81)
5a: SCOP_d1ohha3 (A:95-379)
5b: SCOP_d1ohhb3 (B:95-379)
5c: SCOP_d1ohhc3 (C:95-379)
6a: SCOP_d1ohhd3 (D:82-357)
6b: SCOP_d1ohhe3 (E:82-357)
6c: SCOP_d1ohhf3 (F:82-357)
7a: SCOP_d1ohhg_ (G:)
8a: SCOP_d1ohhh_ (H:)
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Protein Domains
(
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(
)
Organisms
(
)
(
)
Class
:
All alpha proteins
(14657)
Fold
:
Left-handed superhelix
(73)
Superfamily
:
C-terminal domain of alpha and beta subunits of F1 ATP synthase
(55)
Family
:
C-terminal domain of alpha and beta subunits of F1 ATP synthase
(41)
Protein domain
:
F1 ATP synthase alpha subunit, domain 3
(19)
Cow (Bos taurus) [TaxId: 9913]
(15)
1a
d1ohha1
A:380-510
1b
d1ohhb1
B:380-510
1c
d1ohhc1
C:380-510
Protein domain
:
F1 ATP synthase beta subunit, domain 3
(22)
Cow (Bos taurus) [TaxId: 9913]
(18)
2a
d1ohhd1
D:358-477
2b
d1ohhe1
E:358-474
2c
d1ohhf1
F:358-474
Class
:
All beta proteins
(24004)
Fold
:
Domain of alpha and beta subunits of F1 ATP synthase-like
(89)
Superfamily
:
N-terminal domain of alpha and beta subunits of F1 ATP synthase
(55)
Family
:
N-terminal domain of alpha and beta subunits of F1 ATP synthase
(41)
Protein domain
:
F1 ATP synthase alpha subunit, domain 1
(19)
Cow (Bos taurus) [TaxId: 9913]
(15)
3a
d1ohha2
A:24-94
3b
d1ohhb2
B:24-94
3c
d1ohhc2
C:19-94
Protein domain
:
F1 ATP synthase beta subunit, domain 1
(22)
Cow (Bos taurus) [TaxId: 9913]
(18)
4a
d1ohhd2
D:9-81
4b
d1ohhe2
E:9-81
4c
d1ohhf2
F:9-81
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
P-loop containing nucleoside triphosphate hydrolases
(2083)
Superfamily
:
P-loop containing nucleoside triphosphate hydrolases
(2083)
Family
:
RecA protein-like (ATPase-domain)
(159)
Protein domain
:
Central domain of alpha subunit of F1 ATP synthase
(19)
Cow (Bos taurus) [TaxId: 9913]
(15)
5a
d1ohha3
A:95-379
5b
d1ohhb3
B:95-379
5c
d1ohhc3
C:95-379
Protein domain
:
Central domain of beta subunit of F1 ATP synthase
(22)
Cow (Bos taurus) [TaxId: 9913]
(18)
6a
d1ohhd3
D:82-357
6b
d1ohhe3
E:82-357
6c
d1ohhf3
F:82-357
Fold
:
Pyruvate kinase C-terminal domain-like
(59)
Superfamily
:
ATP synthase (F1-ATPase), gamma subunit
(29)
Family
:
ATP synthase (F1-ATPase), gamma subunit
(22)
Protein domain
:
ATP synthase (F1-ATPase), gamma subunit
(22)
Cow (Bos taurus) [TaxId: 9913]
(19)
7a
d1ohhg_
G:
Class
:
Coiled coil proteins
(689)
Fold
:
Antiparallel coiled-coil
(45)
Superfamily
:
F1 ATPase inhibitor, IF1, C-terminal domain
(4)
Family
:
F1 ATPase inhibitor, IF1, C-terminal domain
(4)
Protein domain
:
F1 ATPase inhibitor, IF1, C-terminal domain
(3)
Cow (Bos taurus) [TaxId: 9913]
(3)
8a
d1ohhh_
H:
[
close SCOP info
]
CATH Domains
(7, 20)
Info
all CATH domains
1a: CATH_1ohhD02 (D:82-357)
1b: CATH_1ohhA02 (A:94-379)
1c: CATH_1ohhB02 (B:94-379)
1d: CATH_1ohhC02 (C:94-379)
1e: CATH_1ohhE02 (E:82-357)
1f: CATH_1ohhF02 (F:82-357)
2a: CATH_1ohhE03 (E:358-474)
2b: CATH_1ohhF03 (F:358-474)
2c: CATH_1ohhD03 (D:358-475)
3a: CATH_1ohhG00 (G:1-272)
4a: CATH_1ohhC03 (C:380-509)
4b: CATH_1ohhA03 (A:380-510)
4c: CATH_1ohhB03 (B:380-509)
5a: CATH_1ohhH00 (H:4-40)
6a: CATH_1ohhA01 (A:24-93)
6b: CATH_1ohhB01 (B:24-93)
6c: CATH_1ohhC01 (C:24-93)
7a: CATH_1ohhD01 (D:9-81)
7b: CATH_1ohhE01 (E:9-81)
7c: CATH_1ohhF01 (F:9-81)
View:
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)
Topologies
(
)
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)
Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
3-Layer(aba) Sandwich
(12045)
Topology
:
Rossmann fold
(7312)
Homologous Superfamily
:
P-loop containing nucleotide triphosphate hydrolases
(1378)
Bovine (Bos taurus)
(17)
1a
1ohhD02
D:82-357
1b
1ohhA02
A:94-379
1c
1ohhB02
B:94-379
1d
1ohhC02
C:94-379
1e
1ohhE02
E:82-357
1f
1ohhF02
F:82-357
Class
:
Mainly Alpha
(13335)
Architecture
:
Orthogonal Bundle
(10391)
Topology
:
Bovine Mitochondrial F1-ATPase, ATP Synthase Beta Chain; Chain D, domain3
(32)
Homologous Superfamily
:
Bovine Mitochondrial F1-atpase; Atp Synthase Beta Chain; Chain D, domain 3
(32)
Bovine (Bos taurus)
(17)
2a
1ohhE03
E:358-474
2b
1ohhF03
F:358-474
2c
1ohhD03
D:358-475
Topology
:
Helix Hairpins
(718)
Homologous Superfamily
:
[code=1.10.287.80, no name defined]
(43)
Bovine (Bos taurus)
(13)
3a
1ohhG00
G:1-272
Architecture
:
Up-down Bundle
(3216)
Topology
:
Lysin
(39)
Homologous Superfamily
:
[code=1.20.150.20, no name defined]
(33)
Bovine (Bos taurus)
(17)
4a
1ohhC03
C:380-509
4b
1ohhA03
A:380-510
4c
1ohhB03
B:380-509
Topology
:
Single alpha-helices involved in coiled-coils or other helix-helix interfaces
(552)
Homologous Superfamily
:
Single helix bin
(4)
Bovine (Bos taurus)
(2)
5a
1ohhH00
H:4-40
Class
:
Mainly Beta
(13760)
Architecture
:
Beta Barrel
(4804)
Topology
:
Elongation Factor Tu (Ef-tu); domain 3
(323)
Homologous Superfamily
:
[code=2.40.30.20, no name defined]
(40)
Bovine (Bos taurus)
(17)
6a
1ohhA01
A:24-93
6b
1ohhB01
B:24-93
6c
1ohhC01
C:24-93
Topology
:
Thrombin, subunit H
(1535)
Homologous Superfamily
:
[code=2.40.10.170, no name defined]
(33)
Bovine (Bos taurus)
(17)
7a
1ohhD01
D:9-81
7b
1ohhE01
E:9-81
7c
1ohhF01
F:9-81
[
close CATH info
]
Pfam Domains
(5, 20)
Info
all PFAM domains
1a: PFAM_ATP_synt_ab_N_1ohhC01 (C:24-92)
1b: PFAM_ATP_synt_ab_N_1ohhC02 (C:24-92)
1c: PFAM_ATP_synt_ab_N_1ohhC03 (C:24-92)
1d: PFAM_ATP_synt_ab_N_1ohhF01 (F:13-79)
1e: PFAM_ATP_synt_ab_N_1ohhF02 (F:13-79)
1f: PFAM_ATP_synt_ab_N_1ohhF03 (F:13-79)
2a: PFAM_ATP_synt_ab_1ohhC04 (C:148-372)
2b: PFAM_ATP_synt_ab_1ohhC05 (C:148-372)
2c: PFAM_ATP_synt_ab_1ohhC06 (C:148-372)
2d: PFAM_ATP_synt_ab_1ohhF04 (F:135-355)
2e: PFAM_ATP_synt_ab_1ohhF05 (F:135-355)
2f: PFAM_ATP_synt_ab_1ohhF06 (F:135-355)
3a: PFAM_ATP_synt_1ohhG01 (G:1-272)
4a: PFAM_ATP_synt_ab_C_1ohhC07 (C:384-488)
4b: PFAM_ATP_synt_ab_C_1ohhC08 (C:384-488)
4c: PFAM_ATP_synt_ab_C_1ohhC09 (C:384-488)
4d: PFAM_ATP_synt_ab_C_1ohhF07 (F:368-474)
4e: PFAM_ATP_synt_ab_C_1ohhF08 (F:368-474)
4f: PFAM_ATP_synt_ab_C_1ohhF09 (F:368-474)
5a: PFAM_IATP_1ohhH01 (H:4-40)
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Clans
(
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Families
(
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(
)
Organisms
(
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(
)
Clan
:
HAS-barrel
(27)
Family
:
ATP-synt_ab_N
(27)
Bos taurus (Bovine)
(14)
1a
ATP-synt_ab_N-1ohhC01
C:24-92
1b
ATP-synt_ab_N-1ohhC02
C:24-92
1c
ATP-synt_ab_N-1ohhC03
C:24-92
1d
ATP-synt_ab_N-1ohhF01
F:13-79
1e
ATP-synt_ab_N-1ohhF02
F:13-79
1f
ATP-synt_ab_N-1ohhF03
F:13-79
Clan
:
P-loop_NTPase
(1112)
Family
:
ATP-synt_ab
(44)
Bos taurus (Bovine)
(14)
2a
ATP-synt_ab-1ohhC04
C:148-372
2b
ATP-synt_ab-1ohhC05
C:148-372
2c
ATP-synt_ab-1ohhC06
C:148-372
2d
ATP-synt_ab-1ohhF04
F:135-355
2e
ATP-synt_ab-1ohhF05
F:135-355
2f
ATP-synt_ab-1ohhF06
F:135-355
Clan
:
no clan defined [family: ATP-synt]
(22)
Family
:
ATP-synt
(22)
Bos taurus (Bovine)
(14)
3a
ATP-synt-1ohhG01
G:1-272
Clan
:
no clan defined [family: ATP-synt_ab_C]
(32)
Family
:
ATP-synt_ab_C
(32)
Bos taurus (Bovine)
(14)
4a
ATP-synt_ab_C-1ohhC07
C:384-488
4b
ATP-synt_ab_C-1ohhC08
C:384-488
4c
ATP-synt_ab_C-1ohhC09
C:384-488
4d
ATP-synt_ab_C-1ohhF07
F:368-474
4e
ATP-synt_ab_C-1ohhF08
F:368-474
4f
ATP-synt_ab_C-1ohhF09
F:368-474
Clan
:
no clan defined [family: IATP]
(2)
Family
:
IATP
(2)
Bos taurus (Bovine)
(2)
5a
IATP-1ohhH01
H:4-40
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