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1OH5
Asym. Unit
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Asym.Unit (267 KB)
Biol.Unit 1 (256 KB)
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(1)
Title
:
THE CRYSTAL STRUCTURE OF E. COLI MUTS BINDING TO DNA WITH A C:A MISMATCH
Authors
:
G. Natrajan, M. H. Lamers, J. H. Enzlin, H. H. K. Winterwerp, A. Perrakis T. K. Sixma
Date
:
23 May 03 (Deposition) - 08 Aug 03 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.90
Chains
:
Asym. Unit : A,B,E,F
Biol. Unit 1: A,B,E,F (1x)
Keywords
:
Dna Binding, Mismatch Recognition
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
G. Natrajan, M. H. Lamers, J. H. Enzlin, H. H. K. Winterwerp, A. Perrakis, T. K. Sixma
Structures Of E. Coli Dna Mismatch Repair Enzyme Muts In Complex With Different Mismatches: A Common Recognition Mode For Diverse Substrates
Nucleic Acids Res. V. 31 4814 2003
(for further references see the
PDB file header
)
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Hetero Components
(2, 2)
Info
All Hetero Components
1a: ADENOSINE-5'-DIPHOSPHATE (ADPa)
2a: MAGNESIUM ION (MGa)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
ADP
1
Ligand/Ion
ADENOSINE-5'-DIPHOSPHATE
2
MG
1
Ligand/Ion
MAGNESIUM ION
[
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Sites
(2, 2)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
SER A:621 , ADP A:1801 , HOH A:2023 , HOH A:2024 , HOH A:2025 , HOH A:2031
BINDING SITE FOR RESIDUE MG A1802
2
AC2
SOFTWARE
LEU A:592 , PHE A:596 , ILE A:597 , ASN A:616 , MET A:617 , GLY A:618 , GLY A:619 , LYS A:620 , SER A:621 , THR A:622 , HIS A:760 , MG A:1802 , HOH A:2024 , HOH A:2025
BINDING SITE FOR RESIDUE ADP A1801
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
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Sorry, no Info available
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PROSITE Patterns/Profiles
(1, 2)
Info
All PROSITE Patterns/Profiles
1: DNA_MISMATCH_REPAIR_2 (A:688-704,B:688-704)
;
View:
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
DNA_MISMATCH_REPAIR_2
PS00486
DNA mismatch repair proteins mutS family signature.
MUTS_ECOLI
688-704
2
A:688-704
B:688-704
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Exons
(0, 0)
Info
All Exons
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All Exon Boundaries
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(4, 8)
Info
All SCOP Domains
1a: SCOP_d1oh5a1 (A:270-566)
1b: SCOP_d1oh5b1 (B:270-566)
2a: SCOP_d1oh5a4 (A:2-116)
2b: SCOP_d1oh5b4 (B:14-116)
3a: SCOP_d1oh5a2 (A:567-800)
3b: SCOP_d1oh5b2 (B:567-800)
4a: SCOP_d1oh5a3 (A:117-269)
4b: SCOP_d1oh5b3 (B:117-269)
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)
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)
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)
(
)
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)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All alpha proteins
(14657)
Fold
:
DNA repair protein MutS, domain III
(14)
Superfamily
:
DNA repair protein MutS, domain III
(14)
Family
:
DNA repair protein MutS, domain III
(12)
Protein domain
:
DNA repair protein MutS, domain III
(12)
Escherichia coli [TaxId: 562]
(8)
1a
d1oh5a1
A:270-566
1b
d1oh5b1
B:270-566
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
MutS N-terminal domain-like
(18)
Superfamily
:
DNA repair protein MutS, domain I
(13)
Family
:
DNA repair protein MutS, domain I
(11)
Protein domain
:
DNA repair protein MutS, domain I
(11)
Escherichia coli [TaxId: 562]
(8)
2a
d1oh5a4
A:2-116
2b
d1oh5b4
B:14-116
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
P-loop containing nucleoside triphosphate hydrolases
(2083)
Superfamily
:
P-loop containing nucleoside triphosphate hydrolases
(2083)
Family
:
ABC transporter ATPase domain-like
(94)
Protein domain
:
DNA repair protein MutS, the C-terminal domain
(12)
Escherichia coli [TaxId: 562]
(8)
3a
d1oh5a2
A:567-800
3b
d1oh5b2
B:567-800
Fold
:
Ribonuclease H-like motif
(1424)
Superfamily
:
DNA repair protein MutS, domain II
(14)
Family
:
DNA repair protein MutS, domain II
(12)
Protein domain
:
DNA repair protein MutS, domain II
(12)
Escherichia coli [TaxId: 562]
(8)
4a
d1oh5a3
A:117-269
4b
d1oh5b3
B:117-269
[
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CATH Domains
(4, 8)
Info
all CATH domains
1a: CATH_1oh5A02 (A:130-265)
1b: CATH_1oh5B02 (B:130-265)
2a: CATH_1oh5A01 (A:2-124)
2b: CATH_1oh5B01 (B:14-124)
3a: CATH_1oh5A05 (A:567-800)
3b: CATH_1oh5B05 (B:567-800)
4a: CATH_1oh5A03 (A:266-384,A:538-566)
4b: CATH_1oh5B03 (B:266-384,B:538-566)
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)
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)
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)
Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
2-Layer Sandwich
(8480)
Topology
:
Nucleotidyltransferase; domain 5
(788)
Homologous Superfamily
:
[code=3.30.420.110, no name defined]
(14)
Escherichia coli. Organism_taxid: 562. Strain: b834 de3. Variant: plyss.
(4)
1a
1oh5A02
A:130-265
1b
1oh5B02
B:130-265
Architecture
:
3-Layer(aba) Sandwich
(12045)
Topology
:
MutS, DNA mismatch repair protein, domain I
(15)
Homologous Superfamily
:
[code=3.40.1170.10, no name defined]
(13)
Escherichia coli. Organism_taxid: 562. Strain: b834 de3. Variant: plyss.
(4)
2a
1oh5A01
A:2-124
2b
1oh5B01
B:14-124
Topology
:
Rossmann fold
(7312)
Homologous Superfamily
:
P-loop containing nucleotide triphosphate hydrolases
(1378)
Escherichia coli. Organism_taxid: 562. Strain: b834 de3. Variant: plyss.
(4)
3a
1oh5A05
A:567-800
3b
1oh5B05
B:567-800
Class
:
Mainly Alpha
(13335)
Architecture
:
Orthogonal Bundle
(10391)
Topology
:
MutS, DNA mismatch repair protein; Chain A, domain 3
(14)
Homologous Superfamily
:
[code=1.10.1420.10, no name defined]
(14)
Escherichia coli. Organism_taxid: 562. Strain: b834 de3. Variant: plyss.
(4)
4a
1oh5A03
A:266-384,A:538-566
4b
1oh5B03
B:266-384,B:538-566
[
close CATH info
]
Pfam Domains
(5, 10)
Info
all PFAM domains
1a: PFAM_MutS_V_1oh5B01 (B:567-799)
1b: PFAM_MutS_V_1oh5B02 (B:567-799)
2a: PFAM_MutS_III_1oh5B03 (B:271-560)
2b: PFAM_MutS_III_1oh5B04 (B:271-560)
3a: PFAM_MutS_II_1oh5B05 (B:131-256)
3b: PFAM_MutS_II_1oh5B06 (B:131-256)
4a: PFAM_MutS_IV_1oh5B07 (B:428-519)
4b: PFAM_MutS_IV_1oh5B08 (B:428-519)
5a: PFAM_MutS_I_1oh5B09 (B:14-123)
5b: PFAM_MutS_I_1oh5B10 (B:14-123)
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Clans
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)
(
)
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)
(
)
Organisms
(
)
(
)
Clan
:
P-loop_NTPase
(1112)
Family
:
MutS_V
(16)
Escherichia coli (strain K12)
(10)
1a
MutS_V-1oh5B01
B:567-799
1b
MutS_V-1oh5B02
B:567-799
Clan
:
no clan defined [family: MutS_III]
(16)
Family
:
MutS_III
(16)
Escherichia coli (strain K12)
(10)
2a
MutS_III-1oh5B03
B:271-560
2b
MutS_III-1oh5B04
B:271-560
Clan
:
no clan defined [family: MutS_II]
(16)
Family
:
MutS_II
(16)
Escherichia coli (strain K12)
(10)
3a
MutS_II-1oh5B05
B:131-256
3b
MutS_II-1oh5B06
B:131-256
Clan
:
no clan defined [family: MutS_IV]
(16)
Family
:
MutS_IV
(16)
Escherichia coli (strain K12)
(10)
4a
MutS_IV-1oh5B07
B:428-519
4b
MutS_IV-1oh5B08
B:428-519
Clan
:
no clan defined [family: MutS_I]
(16)
Family
:
MutS_I
(16)
Escherichia coli (strain K12)
(10)
5a
MutS_I-1oh5B09
B:14-123
5b
MutS_I-1oh5B10
B:14-123
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