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1OGE
Biol. Unit 1
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Asym.Unit (111 KB)
Biol.Unit 1 (211 KB)
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(1)
Title
:
THE STRUCTURE OF BACILLUS SUBTILIS RBSD COMPLEXED WITH RIBOSE 5-PHOSPHATE
Authors
:
M. -S. Kim, B. -H. Oh
Date
:
30 Apr 03 (Deposition) - 01 Sep 03 (Release) - 20 Apr 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.05
Chains
:
Asym. Unit : A,B,C,D,E
Biol. Unit 1: A,B,C,D,E (2x)
Keywords
:
Ribose 5-Phosphate, Transport, Sugar Transport
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
M. -S. Kim, J. Shin, W. Lee, H. -S. Lee, B. -H. Oh
Crystal Structures Of Rbsd Leading To The Identification Of Cytoplasmic Sugar-Binding Proteins With A Novel Folding Architecture
J. Biol. Chem. V. 278 28173 2003
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Hetero Components
(1, 10)
Info
All Hetero Components
1a: CHLORIDE ION (CLa)
1b: CHLORIDE ION (CLb)
2a: 5-O-PHOSPHONO-BETA-D-RIBOFURANOSE (RP5a)
2b: 5-O-PHOSPHONO-BETA-D-RIBOFURANOSE (RP5b)
2c: 5-O-PHOSPHONO-BETA-D-RIBOFURANOSE (RP5c)
2d: 5-O-PHOSPHONO-BETA-D-RIBOFURANOSE (RP5d)
2e: 5-O-PHOSPHONO-BETA-D-RIBOFURANOSE (RP5e)
View:
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Label:
No.
Name
Count
Type
Full Name
1
CL
-1
Ligand/Ion
CHLORIDE ION
2
RP5
10
Ligand/Ion
5-O-PHOSPHONO-BETA-D-RIBOFURANOSE
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Sites
(7, 7)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
5: AC5 (SOFTWARE)
6: AC6 (SOFTWARE)
7: AC7 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
LYS A:2 , LYS C:2
BINDING SITE FOR RESIDUE CL A1132
2
AC2
SOFTWARE
LYS D:2 , LYS E:2
BINDING SITE FOR RESIDUE CL D1132
3
AC3
SOFTWARE
ASP A:28 , GLY A:30 , LEU A:31 , HIS A:98 , TYR A:120 , HIS E:20 , VAL E:129
BINDING SITE FOR RESIDUE RP5 A1133
4
AC4
SOFTWARE
HIS A:20 , ASP B:28 , GLY B:30 , LEU B:31 , HIS B:98 , PRO B:119 , TYR B:120 , HOH B:2021
BINDING SITE FOR RESIDUE RP5 B1132
5
AC5
SOFTWARE
HIS B:20 , ASP C:28 , GLY C:30 , LEU C:31 , HIS C:98 , PRO C:119 , TYR C:120 , HOH C:2049
BINDING SITE FOR RESIDUE RP5 C1132
6
AC6
SOFTWARE
HIS C:20 , ASP D:28 , GLY D:30 , LEU D:31 , HIS D:98 , TYR D:120 , HOH D:2043
BINDING SITE FOR RESIDUE RP5 D1133
7
AC7
SOFTWARE
HIS D:20 , ASP E:28 , GLY E:30 , LEU E:31 , HIS E:98 , PRO E:119 , TYR E:120 , HOH E:2044
BINDING SITE FOR RESIDUE RP5 E1132
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SAPs(SNPs)/Variants
(0, 0)
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(mutated residues are only available for the asymmetric unit)
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PROSITE Patterns/Profiles
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Exons
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Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
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SCOP Domains
(1, 5)
Info
All SCOP Domains
1a: SCOP_d1ogea_ (A:)
1b: SCOP_d1ogeb_ (B:)
1c: SCOP_d1ogec_ (C:)
1d: SCOP_d1oged_ (D:)
1e: SCOP_d1ogee_ (E:)
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Protein Domains
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Organisms
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)
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
RbsD-like
(12)
Superfamily
:
RbsD-like
(12)
Family
:
RbsD-like
(5)
Protein domain
:
Ribose transport protein RbsD
(4)
Bacillus subtilis [TaxId: 1423]
(4)
1a
d1ogea_
A:
1b
d1ogeb_
B:
1c
d1ogec_
C:
1d
d1oged_
D:
1e
d1ogee_
E:
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CATH Domains
(0, 0)
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all CATH domains
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Pfam Domains
(1, 5)
Info
all PFAM domains
1a: PFAM_RbsD_FucU_1ogeE01 (E:1-131)
1b: PFAM_RbsD_FucU_1ogeE02 (E:1-131)
1c: PFAM_RbsD_FucU_1ogeE03 (E:1-131)
1d: PFAM_RbsD_FucU_1ogeE04 (E:1-131)
1e: PFAM_RbsD_FucU_1ogeE05 (E:1-131)
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Organisms
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)
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)
Clan
:
no clan defined [family: RbsD_FucU]
(9)
Family
:
RbsD_FucU
(9)
Bacillus subtilis
(4)
1a
RbsD_FucU-1ogeE01
E:1-131
1b
RbsD_FucU-1ogeE02
E:1-131
1c
RbsD_FucU-1ogeE03
E:1-131
1d
RbsD_FucU-1ogeE04
E:1-131
1e
RbsD_FucU-1ogeE05
E:1-131
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Asym.Unit (111 KB)
Header - Asym.Unit
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