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1OG5
Biol. Unit 1
Info
Asym.Unit (169 KB)
Biol.Unit 1 (83 KB)
Biol.Unit 2 (82 KB)
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(1)
Title
:
STRUCTURE OF HUMAN CYTOCHROME P450 CYP2C9
Authors
:
P. A. Williams, J. Cosme, A. Ward, H. C. Angove, D. Matak Vinkovic, H. Jhoti
Date
:
24 Apr 03 (Deposition) - 17 Jul 03 (Release) - 09 Nov 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.55
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Keywords
:
Drug Metabolism, Electron Transport, Oxidoreductase, Heme, Monooxygenase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
P. A. Williams, J. Cosme, A. Ward, H. C. Angove, D. Matak Vinkovic, H. Jhoti
Crystal Structure Of Human Cytochrome P450 2C9 With Bound Warfarin
Nature V. 424 464 2003
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Hetero Components
(2, 2)
Info
All Hetero Components
1a: HEME C (HECa)
1b: HEME C (HECb)
2a: S-WARFARIN (SWFa)
2b: S-WARFARIN (SWFb)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
HEC
1
Ligand/Ion
HEME C
2
SWF
1
Ligand/Ion
S-WARFARIN
[
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]
Sites
(2, 2)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
ARG A:97 , VAL A:113 , TRP A:120 , ARG A:124 , LEU A:294 , ALA A:297 , GLY A:298 , THR A:301 , THR A:302 , THR A:305 , GLN A:356 , LEU A:362 , SER A:365 , HIS A:368 , PRO A:427 , PHE A:428 , SER A:429 , ARG A:433 , CYS A:435 , ALA A:441
BINDING SITE FOR RESIDUE HEC A 501
2
AC2
SOFTWARE
ARG A:97 , GLY A:98 , PHE A:100 , LEU A:102 , VAL A:113 , PHE A:114 , LEU A:208 , ASN A:217 , THR A:364 , SER A:365 , LEU A:366 , PRO A:367 , PHE A:476 , HOH A:2197
BINDING SITE FOR RESIDUE SWF A 502
[
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SAPs(SNPs)/Variants
(12, 12)
Info
(mutated residues are only available for the asymmetric unit)
All SNPs/Variants
01: VAR_008343 (R144C, chain A, )
02: VAR_018863 (R150H, chain A, )
03: VAR_018864 (H251R, chain A, )
04: VAR_018865 (E272G, chain A, )
05: VAR_018866 (R335W, chain A, )
06: VAR_008344 (Y358C, chain A, )
07: VAR_008345 (I359L, chain A, )
08: VAR_013515 (I359T, chain A, )
09: VAR_013516 (D360E, chain A, )
10: VAR_024717 (L413P, chain A, )
11: VAR_008346 (G417D, chain A, )
12: VAR_018867 (P489S, chain A, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
01
UniProt
VAR_008343
R
144
C
CP2C9_HUMAN
Polymorphism
1799853
A
R
144
C
02
UniProt
VAR_018863
R
150
H
CP2C9_HUMAN
Polymorphism
7900194
A
R
150
H
03
UniProt
VAR_018864
H
251
R
CP2C9_HUMAN
Polymorphism
2256871
A
H
251
R
04
UniProt
VAR_018865
E
272
G
CP2C9_HUMAN
Polymorphism
9332130
A
E
272
G
05
UniProt
VAR_018866
R
335
W
CP2C9_HUMAN
Polymorphism
28371685
A
R
335
W
06
UniProt
VAR_008344
Y
358
C
CP2C9_HUMAN
Polymorphism
1057909
A
Y
358
C
07
UniProt
VAR_008345
I
359
L
CP2C9_HUMAN
Polymorphism
1057910
A
I
359
L
08
UniProt
VAR_013515
I
359
T
CP2C9_HUMAN
Polymorphism
56165452
A
I
359
T
09
UniProt
VAR_013516
D
360
E
CP2C9_HUMAN
Polymorphism
28371686
A
D
360
E
10
UniProt
VAR_024717
L
413
P
CP2C9_HUMAN
Polymorphism
28371687
A
L
413
P
11
UniProt
VAR_008346
G
417
D
CP2C9_HUMAN
Polymorphism
---
A
G
417
D
12
UniProt
VAR_018867
P
489
S
CP2C9_HUMAN
Polymorphism
9332239
A
P
489
S
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
[
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]
PROSITE Patterns/Profiles
(1, 1)
Info
All PROSITE Patterns/Profiles
1: CYTOCHROME_P450 (A:428-437)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
CYTOCHROME_P450
PS00086
Cytochrome P450 cysteine heme-iron ligand signature.
CP2C9_HUMAN
428-437
1
A:428-437
-
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Exons
(0, 0)
Info
All Exons
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All Exon Boundaries
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(1, 2)
Info
All SCOP Domains
1a: SCOP_d1og5a_ (A:)
1b: SCOP_d1og5b_ (B:)
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Classes
(
)
(
)
Folds
(
)
(
)
Superfamilies
(
)
(
)
Families
(
)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All alpha proteins
(14657)
Fold
:
Cytochrome P450
(480)
Superfamily
:
Cytochrome P450
(480)
Family
:
Cytochrome P450
(323)
Protein domain
:
Mammalian cytochrome p450 2c9
(3)
Human (Homo sapiens) [TaxId: 9606]
(3)
1a
d1og5a_
A:
1b
d1og5b_
B:
[
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CATH Domains
(1, 2)
Info
all CATH domains
1a: CATH_1og5A00 (A:30-490)
1b: CATH_1og5B00 (B:30-490)
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)
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Homologous Superfamilies
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)
(
)
Organisms
(
)
(
)
Class
:
Mainly Alpha
(13335)
Architecture
:
Orthogonal Bundle
(10391)
Topology
:
Cytochrome p450
(271)
Homologous Superfamily
:
Cytochrome p450
(271)
Human (Homo sapiens)
(32)
1a
1og5A00
A:30-490
1b
1og5B00
B:30-490
[
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Pfam Domains
(1, 2)
Info
all PFAM domains
1a: PFAM_p450_1og5B01 (B:30-487)
1b: PFAM_p450_1og5B02 (B:30-487)
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Clans
(
)
(
)
Families
(
)
(
)
Organisms
(
)
(
)
Clan
:
no clan defined [family: p450]
(161)
Family
:
p450
(161)
Homo sapiens (Human)
(33)
1a
p450-1og5B01
B:30-487
1b
p450-1og5B02
B:30-487
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Chain A
Asymmetric Unit 1
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select all 'ALA' residues (Alanines) in chain 'A'
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select residue range 5 to 10 in all chains
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select residue range 5 to 10 in chain 'A'
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set label size to 20 (allowed range: 1-58)
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Show PDB file:
Asym.Unit (169 KB)
Header - Asym.Unit
Biol.Unit 1 (83 KB)
Header - Biol.Unit 1
Biol.Unit 2 (82 KB)
Header - Biol.Unit 2
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