PLEASE WAIT...
Getting 'Biological Unit' information from database.
PLEASE WAIT...
Getting 'Hetero Component' information from database.
PLEASE WAIT...
Getting 'Site' information from database.
PLEASE WAIT...
Getting 'PROSITE' information from database.
PLEASE WAIT...
Getting 'Exon' information from database.
1OG2
Asym. Unit
Info
Asym.Unit (162 KB)
Biol.Unit 1 (80 KB)
Biol.Unit 2 (79 KB)
(using Jmol or JSmol)
spin
show selected part
auto zoom/center
Standard Views
(
Basic
|
Advanced
Interface
)
(
Basic
|
Advanced
Interface
)
Help
(1)
Title
:
STRUCTURE OF HUMAN CYTOCHROME P450 CYP2C9
Authors
:
P. A. Williams, J. Cosme, A. Ward, H. C. Angove, D. Matak Vinkovic, H. Jhoti
Date
:
23 Apr 03 (Deposition) - 17 Jul 03 (Release) - 09 Nov 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.60
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Keywords
:
Drug Metabolism, Electron Transport, Oxidoreductase, Heme, Monooxygenase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
P. A. Williams, J. Cosme, A. Ward, H. C. Angove, D. Matak Vinkovic, H. Jhoti
Crystal Structure Of Human Cytochrome P450 2C9 With Bound Warfarin
Nature V. 424 464 2003
[
close entry info
]
Hetero Components
(1, 2)
Info
All Hetero Components
1a: HEME C (HECa)
1b: HEME C (HECb)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
HEC
2
Ligand/Ion
HEME C
[
close Hetero Component info
]
Sites
(2, 2)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
ARG A:97 , ILE A:112 , VAL A:113 , TRP A:120 , ARG A:124 , ALA A:297 , GLY A:298 , THR A:301 , THR A:302 , THR A:305 , GLN A:356 , LEU A:362 , SER A:365 , HIS A:368 , PRO A:427 , PHE A:428 , SER A:429 , ARG A:433 , CYS A:435 , VAL A:436 , GLU A:444 , HOH A:2031
BINDING SITE FOR RESIDUE HEC A 501
2
AC2
SOFTWARE
ARG B:97 , TRP B:120 , ARG B:124 , LEU B:294 , ALA B:297 , GLY B:298 , THR B:301 , THR B:302 , THR B:305 , GLN B:356 , LEU B:362 , SER B:365 , HIS B:368 , PRO B:427 , PHE B:428 , SER B:429 , ARG B:433 , CYS B:435
BINDING SITE FOR RESIDUE HEC B 501
[
close Site info
]
SAPs(SNPs)/Variants
(12, 24)
Info
(mutated residues are not available)
All SNPs/Variants
01: VAR_008343 (R144C, chain A/B, )
02: VAR_018863 (R150H, chain A/B, )
03: VAR_018864 (H251R, chain A/B, )
04: VAR_018865 (E272G, chain A/B, )
05: VAR_018866 (R335W, chain A/B, )
06: VAR_008344 (Y358C, chain A/B, )
07: VAR_008345 (I359L, chain A/B, )
08: VAR_013515 (I359T, chain A/B, )
09: VAR_013516 (D360E, chain A/B, )
10: VAR_024717 (L413P, chain A/B, )
11: VAR_008346 (G417D, chain A/B, )
12: VAR_018867 (P489S, chain A/B, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
01
UniProt
VAR_008343
R
144
C
CP2C9_HUMAN
Polymorphism
1799853
A/B
R
144
C
02
UniProt
VAR_018863
R
150
H
CP2C9_HUMAN
Polymorphism
7900194
A/B
R
150
H
03
UniProt
VAR_018864
H
251
R
CP2C9_HUMAN
Polymorphism
2256871
A/B
H
251
R
04
UniProt
VAR_018865
E
272
G
CP2C9_HUMAN
Polymorphism
9332130
A/B
E
272
G
05
UniProt
VAR_018866
R
335
W
CP2C9_HUMAN
Polymorphism
28371685
A/B
R
335
W
06
UniProt
VAR_008344
Y
358
C
CP2C9_HUMAN
Polymorphism
1057909
A/B
Y
358
C
07
UniProt
VAR_008345
I
359
L
CP2C9_HUMAN
Polymorphism
1057910
A/B
I
359
L
08
UniProt
VAR_013515
I
359
T
CP2C9_HUMAN
Polymorphism
56165452
A/B
I
359
T
09
UniProt
VAR_013516
D
360
E
CP2C9_HUMAN
Polymorphism
28371686
A/B
D
360
E
10
UniProt
VAR_024717
L
413
P
CP2C9_HUMAN
Polymorphism
28371687
A/B
L
413
P
11
UniProt
VAR_008346
G
417
D
CP2C9_HUMAN
Polymorphism
---
A/B
G
417
D
12
UniProt
VAR_018867
P
489
S
CP2C9_HUMAN
Polymorphism
9332239
A/B
P
489
S
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
[
close SNP/Variant info
]
PROSITE Patterns/Profiles
(1, 2)
Info
All PROSITE Patterns/Profiles
1: CYTOCHROME_P450 (A:428-437,B:428-437)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
CYTOCHROME_P450
PS00086
Cytochrome P450 cysteine heme-iron ligand signature.
CP2C9_HUMAN
428-437
2
A:428-437
B:428-437
[
close PROSITE info
]
Exons
(9, 18)
Info
All Exons
Exon 1.1b (A:30-56 | B:30-56)
Exon 1.2a (A:57-111 | B:57-111)
Exon 1.3a (A:111-161 | B:111-161)
Exon 1.4 (A:161-214 | B:161-214)
Exon 1.5a (A:215-273 | B:215-273)
Exon 1.6 (A:274-321 | B:274-321)
Exon 1.7 (A:321-383 | B:321-383)
Exon 1.8 (A:384-431 | B:384-431)
Exon 1.9 (A:431-490 | B:431-490)
View:
Select:
Label:
All Exon Boundaries
01: Boundary -/1.1b
02: Boundary 1.1b/1.2a
03: Boundary 1.2a/1.3a
04: Boundary 1.3a/1.4
05: Boundary 1.4/1.5a
06: Boundary 1.5a/1.6
07: Boundary 1.6/1.7
08: Boundary 1.7/1.8
09: Boundary 1.8/1.9
10: Boundary 1.9/-
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1b
ENST00000260682
1b
ENSE00001809652
chr10:
96698428-96698607
180
CP2C9_HUMAN
1-56
56
2
A:30-56
B:30-56
27
27
1.2a
ENST00000260682
2a
ENSE00001662713
chr10:
96701615-96701777
163
CP2C9_HUMAN
57-111
55
2
A:57-111
B:57-111
55
55
1.3a
ENST00000260682
3a
ENSE00001730103
chr10:
96701949-96702098
150
CP2C9_HUMAN
111-161
51
2
A:111-161
B:111-161
51
51
1.4
ENST00000260682
4
ENSE00001595620
chr10:
96707536-96707696
161
CP2C9_HUMAN
161-214
54
2
A:161-214
B:161-214
54
54
1.5a
ENST00000260682
5a
ENSE00001711217
chr10:
96708865-96709041
177
CP2C9_HUMAN
215-273
59
2
A:215-273
B:215-273
59
59
1.6
ENST00000260682
6
ENSE00001653852
chr10:
96731861-96732002
142
CP2C9_HUMAN
274-321
48
2
A:274-321
B:274-321
48
48
1.7
ENST00000260682
7
ENSE00001785730
chr10:
96740940-96741127
188
CP2C9_HUMAN
321-383
63
2
A:321-383
B:321-383
63
63
1.8
ENST00000260682
8
ENSE00001603154
chr10:
96745790-96745931
142
CP2C9_HUMAN
384-431
48
2
A:384-431
B:384-431
48
48
1.9
ENST00000260682
9
ENSE00001162173
chr10:
96748604-96749147
544
CP2C9_HUMAN
431-490
60
2
A:431-490
B:431-490
60
60
[
close EXON info
]
SCOP Domains
(1, 2)
Info
All SCOP Domains
1a: SCOP_d1og2a_ (A:)
1b: SCOP_d1og2b_ (B:)
View:
Select:
Label:
Classes
(
)
(
)
Folds
(
)
(
)
Superfamilies
(
)
(
)
Families
(
)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All alpha proteins
(14657)
Fold
:
Cytochrome P450
(480)
Superfamily
:
Cytochrome P450
(480)
Family
:
Cytochrome P450
(323)
Protein domain
:
Mammalian cytochrome p450 2c9
(3)
Human (Homo sapiens) [TaxId: 9606]
(3)
1a
d1og2a_
A:
1b
d1og2b_
B:
[
close SCOP info
]
CATH Domains
(1, 2)
Info
all CATH domains
1a: CATH_1og2A00 (A:30-491)
1b: CATH_1og2B00 (B:30-491)
View:
Select:
Label:
Classes
(
)
(
)
Architectures
(
)
(
)
Topologies
(
)
(
)
Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Mainly Alpha
(13335)
Architecture
:
Orthogonal Bundle
(10391)
Topology
:
Cytochrome p450
(271)
Homologous Superfamily
:
Cytochrome p450
(271)
Human (Homo sapiens)
(32)
1a
1og2A00
A:30-491
1b
1og2B00
B:30-491
[
close CATH info
]
Pfam Domains
(1, 2)
Info
all PFAM domains
1a: PFAM_p450_1og2B01 (B:30-487)
1b: PFAM_p450_1og2B02 (B:30-487)
View:
Select:
Label:
Clans
(
)
(
)
Families
(
)
(
)
Organisms
(
)
(
)
Clan
:
no clan defined [family: p450]
(161)
Family
:
p450
(161)
Homo sapiens (Human)
(33)
1a
p450-1og2B01
B:30-487
1b
p450-1og2B02
B:30-487
[
close Pfam info
]
Atom Selection
(currently selected atoms:
all
)
Protein
Nucleic
Backbone
Sidechain
Hetero
Ligand
Solvent
All Atoms
Protein & NOT Variant
Protein & NOT Site
Protein & NOT PROSITE
Chain A
Chain B
Asymmetric Unit 1
Rendering
(selected part)
Molecule Coloring
(selected part)
by Chain (Asym. Unit)
by Chain (Biol. Unit)
by Secondary Structure
by Atom (CPK)
by SCOP Domain
by CATH Domain
by Pfam Domain
by Asymmetric Unit
by Exon
by Amino Acid
by Nucleotide
by Temperature
by Charge
by Rainbow (Group)
by Custom Color
Background Coloring
Choose
molecule
background
color...
[
close
]
RGB value
(e.g.: "#3cb371" or "60,179,113")
Stereo
Graphics Window
x
pixel
Miscellaneous
Script
Example Commands
Example Command
Action
select :A, :C
select chains 'A' and 'C'
select [ALA]:A
select all 'ALA' residues (Alanines) in chain 'A'
select 5-10
select residue range 5 to 10 in all chains
select 5-10:A
select residue range 5 to 10 in chain 'A'
select protein & not helix & not sheet
select non-helix/non-sheet protein parts
set fontsize 20
set label size to 20 (allowed range: 1-58)
ssbonds 100
show SS bonds with a radius of 100 units (=0.4Å)
wireframe 100
show bonds with a radius of 100 units (=0.4Å)
[
close Script example commands
]
Log
Note:
In this "Basic Interface" any change in the selection of a pulldown menu automatically triggers an action (one-step mechanism).
View and selection are coupled in the structure specific controls (e.g. "Hetero","PROSITE") .
Note:
In this "Advanced Interface" any change in the selection of a pulldown menu only sets the target for the corresponding control buttons (two-step mechanism).
View and selection are set independently in the structure specific controls (e.g. "Hetero","PROSITE") .
QuickSearch:
by PDB,NDB,UniProt,PROSITE Code or
Search Term(s)
Show PDB file:
Asym.Unit (162 KB)
Header - Asym.Unit
Biol.Unit 1 (80 KB)
Header - Biol.Unit 1
Biol.Unit 2 (79 KB)
Header - Biol.Unit 2
Plain Text
HTML (compressed size)
use JSmol [Javascript]
use Jmol [Java applet]
Upload:
Select a local file
OR
Enter a remote file address
You can upload any molecular structure file format that is recognized by Jmol,
e.g.: PDB, mmCif, CIF, CML, MOL, XYZ
(also compressed with 'gzip', see the
Jmol documentation
for a complete list)
JenaLib Atlas Page
|
Sequence/Alignment View
1OG2
Jmol Script Commands
|
Jmol Color Schemes
|
Jmol Mouse Manual
|
Jmol Wiki
controls:
collapse
expand
Home
JenaLib
Jmol Scripting
Contact
Help