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1OFW
Biol. Unit 2
Info
Asym.Unit (135 KB)
Biol.Unit 1 (63 KB)
Biol.Unit 2 (64 KB)
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(1)
Title
:
THREE DIMENSIONAL STRUCTURE OF THE OXIDIZED FORM OF NINE HEME CYTOCHROME C AT PH 7.5
Authors
:
I. Bento, V. H. Teixeira, A. M. Baptista, C. M. Soares, P. M. Matias, M. A. Carrondo
Date
:
22 Apr 03 (Deposition) - 18 Sep 03 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.50
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Keywords
:
Electron Transport, Multiheme Cytochrome C, Electron Transfer, Electron Transpor
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
I. Bento, V. H. Teixeira, A. M. Baptista, C. M. Soares, P. M. Matias, M. A. Carrondo
Redox-Bohr And Other Cooperativity Effects In The Nine-Heme Cytochrome C From Desulfovibrio Desulfuricans Atcc 27774: Crystallographic And Modeling Studies
J. Biol. Chem. V. 278 36455 2003
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Hetero Components
(3, 13)
Info
All Hetero Components
1a: ACETATE ION (ACTa)
2a: GLYCEROL (GOLa)
2b: GLYCEROL (GOLb)
2c: GLYCEROL (GOLc)
2d: GLYCEROL (GOLd)
3a: HEME C (HECa)
3b: HEME C (HECb)
3c: HEME C (HECc)
3d: HEME C (HECd)
3e: HEME C (HECe)
3f: HEME C (HECf)
3g: HEME C (HECg)
3h: HEME C (HECh)
3i: HEME C (HECi)
3j: HEME C (HECj)
3k: HEME C (HECk)
3l: HEME C (HECl)
3m: HEME C (HECm)
3n: HEME C (HECn)
3o: HEME C (HECo)
3p: HEME C (HECp)
3q: HEME C (HECq)
3r: HEME C (HECr)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
ACT
1
Ligand/Ion
ACETATE ION
2
GOL
3
Ligand/Ion
GLYCEROL
3
HEC
9
Ligand/Ion
HEME C
[
close Hetero Component info
]
Sites
(16, 16)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC6 (SOFTWARE)
03: AC7 (SOFTWARE)
04: BC2 (SOFTWARE)
05: BC3 (SOFTWARE)
06: BC4 (SOFTWARE)
07: BC5 (SOFTWARE)
08: BC6 (SOFTWARE)
09: BC7 (SOFTWARE)
10: BC8 (SOFTWARE)
11: BC9 (SOFTWARE)
12: CC1 (SOFTWARE)
13: CC2 (SOFTWARE)
14: CC3 (SOFTWARE)
15: CC4 (SOFTWARE)
16: CC5 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
ALA B:69 , HOH B:2087
BINDING SITE FOR RESIDUE ACT B1303
02
AC6
SOFTWARE
MET A:16 , PHE A:17 , PRO A:18 , ALA A:29 , MET A:30 , LYS A:31 , PRO A:32 , VAL A:33 , LEU A:76 , MET A:80 , HIS A:81 , CYS A:97 , TRP A:126 , CYS A:127 , CYS A:130 , HIS A:131 , HEC A:1296 , HOH A:2031 , HOH A:2312 , ARG B:231 , PRO B:239 , SER B:243
BINDING SITE FOR RESIDUE HEC A1298
03
AC7
SOFTWARE
VAL A:172 , ALA A:177 , PRO A:178 , PHE A:195 , HIS A:197 , LEU A:201 , LEU A:224 , CYS A:225 , CYS A:228 , HIS A:229 , LEU A:236 , PRO A:238 , LYS A:240 , CYS A:241 , TYR A:263 , HEC A:1301 , HOH A:2242 , HOH A:2313 , HOH A:2314 , HOH A:2316 , LYS B:26
BINDING SITE FOR RESIDUE HEC A1299
04
BC2
SOFTWARE
SER B:8 , ALA B:10 , ILE B:14 , MET B:16 , PHE B:35 , HIS B:37 , ILE B:44 , CYS B:47 , CYS B:50 , HIS B:51 , PRO B:56 , SER B:58 , CYS B:59 , HOH B:2282 , HOH B:2284 , HOH B:2285 , HOH B:2286 , HOH B:2287
BINDING SITE FOR RESIDUE HEC B1294
05
BC3
SOFTWARE
CYS B:50 , HIS B:52 , VAL B:57 , CYS B:59 , THR B:61 , CYS B:62 , HIS B:63 , GLU B:70 , GLY B:71 , ARG B:78 , ALA B:79 , ARG B:88 , PRO B:94 , VAL B:95 , HOH B:2288 , HOH B:2289 , HOH B:2290
BINDING SITE FOR RESIDUE HEC B1295
06
BC4
SOFTWARE
VAL B:33 , PHE B:35 , ASN B:36 , HIS B:40 , VAL B:95 , SER B:96 , CYS B:97 , CYS B:100 , HIS B:101 , LYS B:212 , ALA B:216 , HOH B:2165 , HOH B:2291 , HOH B:2292 , HOH B:2293 , HOH B:2294 , HOH B:2295
BINDING SITE FOR RESIDUE HEC B1296
07
BC5
SOFTWARE
THR B:105 , ARG B:108 , GLU B:110 , CYS B:111 , CYS B:114 , HIS B:115 , PRO B:120 , LYS B:121 , ARG B:122 , TRP B:126 , ILE B:208 , ASP B:211 , PHE B:217 , HIS B:218 , ILE B:223 , THR B:227 , HOH B:2296
BINDING SITE FOR RESIDUE HEC B1297
08
BC6
SOFTWARE
ARG A:231 , PRO A:239 , SER A:243 , MET B:16 , PHE B:17 , PRO B:18 , ALA B:29 , MET B:30 , LYS B:31 , PRO B:32 , VAL B:33 , LEU B:76 , MET B:80 , HIS B:81 , CYS B:97 , TRP B:126 , CYS B:127 , CYS B:130 , HIS B:131 , GOL B:1305 , HOH B:2297 , HOH B:2298
BINDING SITE FOR RESIDUE HEC B1298
09
BC7
SOFTWARE
HOH A:2024 , VAL B:172 , ALA B:177 , PRO B:178 , PHE B:195 , HIS B:197 , LEU B:201 , LEU B:224 , CYS B:225 , CYS B:228 , HIS B:229 , LEU B:236 , LYS B:240 , CYS B:241 , TYR B:263 , HEC B:1301 , HOH B:2177 , HOH B:2299 , HOH B:2300
BINDING SITE FOR RESIDUE HEC B1299
10
BC8
SOFTWARE
CYS B:228 , HIS B:230 , ARG B:231 , LYS B:240 , CYS B:241 , CYS B:244 , HIS B:245 , ARG B:256 , PRO B:257 , ALA B:262 , LEU B:265 , GLN B:266 , HOH B:2301 , HOH B:2302 , HOH B:2303
BINDING SITE FOR RESIDUE HEC B1300
11
BC9
SOFTWARE
CYS B:114 , ILE B:183 , SER B:193 , PHE B:195 , THR B:196 , ARG B:199 , HIS B:200 , SER B:203 , ARG B:207 , CYS B:267 , CYS B:270 , HIS B:271 , MET B:274 , VAL B:276 , PRO B:279 , HEC B:1299 , HEC B:1302 , HOH B:2304 , HOH B:2305 , HOH B:2307 , HOH B:2308
BINDING SITE FOR RESIDUE HEC B1301
12
CC1
SOFTWARE
ILE B:183 , ASP B:184 , ALA B:185 , LEU B:186 , ALA B:187 , ASP B:188 , LYS B:189 , TYR B:190 , MET B:260 , TYR B:263 , HIS B:264 , MET B:268 , HIS B:271 , ARG B:280 , ASP B:281 , CYS B:284 , CYS B:287 , HIS B:288 , HEC B:1301 , HOH B:2309 , HOH B:2310
BINDING SITE FOR RESIDUE HEC B1302
13
CC2
SOFTWARE
GLY A:27 , ALA A:29 , PRO A:32 , MET A:137 , MET A:142 , HOH A:2324 , THR B:237
BINDING SITE FOR RESIDUE GOL A1303
14
CC3
SOFTWARE
THR A:237 , GLY B:27 , ALA B:29 , LYS B:31 , PRO B:32 , MET B:137 , HOH B:2311 , HOH B:2312
BINDING SITE FOR RESIDUE GOL B1304
15
CC4
SOFTWARE
ARG A:256 , ASP B:77 , HIS B:81 , TRP B:126 , HEC B:1298 , HOH B:2313 , HOH B:2314 , HOH B:2315 , HOH B:2316
BINDING SITE FOR RESIDUE GOL B1305
16
CC5
SOFTWARE
GLU A:124 , HOH A:2130 , LYS B:121 , ARG B:231 , SER B:232 , PRO B:233 , HOH B:2317
BINDING SITE FOR RESIDUE GOL B1306
[
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are only available for the asymmetric unit)
All SNPs/Variants
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PROSITE Patterns/Profiles
(1, 1)
Info
All PROSITE Patterns/Profiles
1: MULTIHEME_CYTC (B:42-293)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
MULTIHEME_CYTC
PS51008
Multiheme cytochrome c family profile.
CYC9_DESDA
72-323
1
-
B:42-293
[
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Exons
(0, 0)
Info
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(1, 2)
Info
All SCOP Domains
1a: SCOP_d1ofwa_ (A:)
1b: SCOP_d1ofwb_ (B:)
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(
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Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All alpha proteins
(14657)
Fold
:
Multiheme cytochromes
(149)
Superfamily
:
Multiheme cytochromes
(149)
Family
:
Cytochrome c3-like
(70)
Protein domain
:
Nine-heme cytochrome c
(4)
Desulfovibrio desulfuricans, ATCC 27774 [TaxId: 876]
(3)
1a
d1ofwa_
A:
1b
d1ofwb_
B:
[
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CATH Domains
(1, 4)
Info
all CATH domains
1a: CATH_1ofwA02 (A:1-99,A:130-167)
1b: CATH_1ofwA01 (A:100-129,A:168-292)
1c: CATH_1ofwB01 (B:100-129,B:168-292)
1d: CATH_1ofwB02 (B:1-99,B:130-167)
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)
(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
Alpha-Beta Complex
(3881)
Topology
:
Cytochrome C3
(62)
Homologous Superfamily
:
Cytochrome C3
(62)
Desulfovibrio desulfuricans. Organism_taxid: 876.
(8)
1a
1ofwA02
A:1-99,A:130-167
1b
1ofwA01
A:100-129,A:168-292
1c
1ofwB01
B:100-129,B:168-292
1d
1ofwB02
B:1-99,B:130-167
[
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Pfam Domains
(1, 4)
Info
all PFAM domains
1a: PFAM_Cytochrom_CIII_1ofwB01 (B:180-290)
1b: PFAM_Cytochrom_CIII_1ofwB02 (B:180-290)
1c: PFAM_Cytochrom_CIII_1ofwB03 (B:180-290)
1d: PFAM_Cytochrom_CIII_1ofwB04 (B:180-290)
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Clans
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Organisms
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)
Clan
:
Multiheme_cytos
(34)
Family
:
Cytochrom_CIII
(23)
Desulfovibrio desulfuricans (strain ATCC 27774 / DSM 6949)
(3)
1a
Cytochrom_CIII-1ofwB01
B:180-290
1b
Cytochrom_CIII-1ofwB02
B:180-290
1c
Cytochrom_CIII-1ofwB03
B:180-290
1d
Cytochrom_CIII-1ofwB04
B:180-290
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