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Asym. Unit
Info
Asym.Unit (135 KB)
Biol.Unit 1 (63 KB)
Biol.Unit 2 (64 KB)
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(1)
Title
:
THREE DIMENSIONAL STRUCTURE OF THE OXIDIZED FORM OF NINE HEME CYTOCHROME C AT PH 7.5
Authors
:
I. Bento, V. H. Teixeira, A. M. Baptista, C. M. Soares, P. M. Matias, M. A. Carrondo
Date
:
22 Apr 03 (Deposition) - 18 Sep 03 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.50
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Keywords
:
Electron Transport, Multiheme Cytochrome C, Electron Transfer, Electron Transpor
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
I. Bento, V. H. Teixeira, A. M. Baptista, C. M. Soares, P. M. Matias, M. A. Carrondo
Redox-Bohr And Other Cooperativity Effects In The Nine-Heme Cytochrome C From Desulfovibrio Desulfuricans Atcc 27774: Crystallographic And Modeling Studies
J. Biol. Chem. V. 278 36455 2003
[
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Hetero Components
(3, 23)
Info
All Hetero Components
1a: ACETATE ION (ACTa)
2a: GLYCEROL (GOLa)
2b: GLYCEROL (GOLb)
2c: GLYCEROL (GOLc)
2d: GLYCEROL (GOLd)
3a: HEME C (HECa)
3b: HEME C (HECb)
3c: HEME C (HECc)
3d: HEME C (HECd)
3e: HEME C (HECe)
3f: HEME C (HECf)
3g: HEME C (HECg)
3h: HEME C (HECh)
3i: HEME C (HECi)
3j: HEME C (HECj)
3k: HEME C (HECk)
3l: HEME C (HECl)
3m: HEME C (HECm)
3n: HEME C (HECn)
3o: HEME C (HECo)
3p: HEME C (HECp)
3q: HEME C (HECq)
3r: HEME C (HECr)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
ACT
1
Ligand/Ion
ACETATE ION
2
GOL
4
Ligand/Ion
GLYCEROL
3
HEC
18
Ligand/Ion
HEME C
[
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Sites
(23, 23)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
18: BC9 (SOFTWARE)
19: CC1 (SOFTWARE)
20: CC2 (SOFTWARE)
21: CC3 (SOFTWARE)
22: CC4 (SOFTWARE)
23: CC5 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
ALA B:69 , HOH B:2087
BINDING SITE FOR RESIDUE ACT B1303
02
AC2
SOFTWARE
SER A:8 , ALA A:10 , ILE A:14 , PHE A:35 , HIS A:37 , HIS A:40 , ILE A:44 , CYS A:47 , CYS A:50 , HIS A:51 , PRO A:56 , VAL A:57 , SER A:58 , HEC A:1296 , HOH A:2292 , HOH A:2293 , HOH A:2294 , HOH A:2295 , HOH A:2296 , HOH A:2297 , HOH A:2298
BINDING SITE FOR RESIDUE HEC A1294
03
AC3
SOFTWARE
CYS A:50 , HIS A:52 , THR A:53 , ASP A:55 , VAL A:57 , CYS A:59 , THR A:61 , CYS A:62 , HIS A:63 , GLU A:70 , ILE A:74 , ARG A:78 , ALA A:79 , ARG A:88 , PRO A:94 , VAL A:95 , HOH A:2299 , HOH A:2300 , HOH A:2301
BINDING SITE FOR RESIDUE HEC A1295
04
AC4
SOFTWARE
VAL A:33 , PHE A:35 , ASN A:36 , HIS A:40 , LYS A:43 , VAL A:95 , SER A:96 , CYS A:97 , CYS A:100 , HIS A:101 , GLN A:104 , LYS A:212 , LEU A:213 , ALA A:216 , HEC A:1294 , HEC A:1298 , HOH A:2302 , HOH A:2303 , HOH A:2304 , HOH A:2305 , HOH A:2306 , HOH A:2307 , HOH A:2308
BINDING SITE FOR RESIDUE HEC A1296
05
AC5
SOFTWARE
THR A:105 , ARG A:108 , GLU A:110 , CYS A:111 , CYS A:114 , HIS A:115 , VAL A:118 , PRO A:120 , LYS A:121 , ARG A:122 , TRP A:126 , ILE A:208 , ASP A:211 , LEU A:213 , PHE A:217 , HIS A:218 , ILE A:223 , LEU A:224 , THR A:227 , HOH A:2309 , HOH A:2310 , HOH A:2311
BINDING SITE FOR RESIDUE HEC A1297
06
AC6
SOFTWARE
MET A:16 , PHE A:17 , PRO A:18 , ALA A:29 , MET A:30 , LYS A:31 , PRO A:32 , VAL A:33 , LEU A:76 , MET A:80 , HIS A:81 , CYS A:97 , TRP A:126 , CYS A:127 , CYS A:130 , HIS A:131 , HEC A:1296 , HOH A:2031 , HOH A:2312 , ARG B:231 , PRO B:239 , SER B:243
BINDING SITE FOR RESIDUE HEC A1298
07
AC7
SOFTWARE
VAL A:172 , ALA A:177 , PRO A:178 , PHE A:195 , HIS A:197 , LEU A:201 , LEU A:224 , CYS A:225 , CYS A:228 , HIS A:229 , LEU A:236 , PRO A:238 , LYS A:240 , CYS A:241 , TYR A:263 , HEC A:1301 , HOH A:2242 , HOH A:2313 , HOH A:2314 , HOH A:2316 , LYS B:26
BINDING SITE FOR RESIDUE HEC A1299
08
AC8
SOFTWARE
CYS A:228 , HIS A:230 , ARG A:231 , LYS A:240 , CYS A:241 , CYS A:244 , HIS A:245 , GLY A:255 , ARG A:256 , PRO A:257 , ALA A:262 , LEU A:265 , GLN A:266 , HOH A:2317 , HOH A:2318 , HOH A:2319
BINDING SITE FOR RESIDUE HEC A1300
09
AC9
SOFTWARE
CYS A:114 , ILE A:117 , SER A:193 , PHE A:195 , THR A:196 , ARG A:199 , HIS A:200 , SER A:203 , LEU A:204 , ARG A:207 , CYS A:267 , CYS A:270 , HIS A:271 , MET A:274 , VAL A:276 , ARG A:278 , PRO A:279 , HEC A:1299 , HEC A:1302 , HOH A:2321
BINDING SITE FOR RESIDUE HEC A1301
10
BC1
SOFTWARE
ILE A:183 , ASP A:184 , ALA A:185 , LEU A:186 , ALA A:187 , ASP A:188 , LYS A:189 , TYR A:190 , MET A:260 , TYR A:263 , HIS A:264 , MET A:268 , HIS A:271 , ASP A:281 , ASP A:283 , CYS A:284 , CYS A:287 , HIS A:288 , HEC A:1301 , HOH A:2322 , HOH A:2323
BINDING SITE FOR RESIDUE HEC A1302
11
BC2
SOFTWARE
SER B:8 , ALA B:10 , ILE B:14 , MET B:16 , PHE B:35 , HIS B:37 , ILE B:44 , CYS B:47 , CYS B:50 , HIS B:51 , PRO B:56 , SER B:58 , CYS B:59 , HOH B:2282 , HOH B:2284 , HOH B:2285 , HOH B:2286 , HOH B:2287
BINDING SITE FOR RESIDUE HEC B1294
12
BC3
SOFTWARE
CYS B:50 , HIS B:52 , VAL B:57 , CYS B:59 , THR B:61 , CYS B:62 , HIS B:63 , GLU B:70 , GLY B:71 , ARG B:78 , ALA B:79 , ARG B:88 , PRO B:94 , VAL B:95 , HOH B:2288 , HOH B:2289 , HOH B:2290
BINDING SITE FOR RESIDUE HEC B1295
13
BC4
SOFTWARE
VAL B:33 , PHE B:35 , ASN B:36 , HIS B:40 , VAL B:95 , SER B:96 , CYS B:97 , CYS B:100 , HIS B:101 , LYS B:212 , ALA B:216 , HOH B:2165 , HOH B:2291 , HOH B:2292 , HOH B:2293 , HOH B:2294 , HOH B:2295
BINDING SITE FOR RESIDUE HEC B1296
14
BC5
SOFTWARE
THR B:105 , ARG B:108 , GLU B:110 , CYS B:111 , CYS B:114 , HIS B:115 , PRO B:120 , LYS B:121 , ARG B:122 , TRP B:126 , ILE B:208 , ASP B:211 , PHE B:217 , HIS B:218 , ILE B:223 , THR B:227 , HOH B:2296
BINDING SITE FOR RESIDUE HEC B1297
15
BC6
SOFTWARE
ARG A:231 , PRO A:239 , SER A:243 , MET B:16 , PHE B:17 , PRO B:18 , ALA B:29 , MET B:30 , LYS B:31 , PRO B:32 , VAL B:33 , LEU B:76 , MET B:80 , HIS B:81 , CYS B:97 , TRP B:126 , CYS B:127 , CYS B:130 , HIS B:131 , GOL B:1305 , HOH B:2297 , HOH B:2298
BINDING SITE FOR RESIDUE HEC B1298
16
BC7
SOFTWARE
HOH A:2024 , VAL B:172 , ALA B:177 , PRO B:178 , PHE B:195 , HIS B:197 , LEU B:201 , LEU B:224 , CYS B:225 , CYS B:228 , HIS B:229 , LEU B:236 , LYS B:240 , CYS B:241 , TYR B:263 , HEC B:1301 , HOH B:2177 , HOH B:2299 , HOH B:2300
BINDING SITE FOR RESIDUE HEC B1299
17
BC8
SOFTWARE
CYS B:228 , HIS B:230 , ARG B:231 , LYS B:240 , CYS B:241 , CYS B:244 , HIS B:245 , ARG B:256 , PRO B:257 , ALA B:262 , LEU B:265 , GLN B:266 , HOH B:2301 , HOH B:2302 , HOH B:2303
BINDING SITE FOR RESIDUE HEC B1300
18
BC9
SOFTWARE
CYS B:114 , ILE B:183 , SER B:193 , PHE B:195 , THR B:196 , ARG B:199 , HIS B:200 , SER B:203 , ARG B:207 , CYS B:267 , CYS B:270 , HIS B:271 , MET B:274 , VAL B:276 , PRO B:279 , HEC B:1299 , HEC B:1302 , HOH B:2304 , HOH B:2305 , HOH B:2307 , HOH B:2308
BINDING SITE FOR RESIDUE HEC B1301
19
CC1
SOFTWARE
ILE B:183 , ASP B:184 , ALA B:185 , LEU B:186 , ALA B:187 , ASP B:188 , LYS B:189 , TYR B:190 , MET B:260 , TYR B:263 , HIS B:264 , MET B:268 , HIS B:271 , ARG B:280 , ASP B:281 , CYS B:284 , CYS B:287 , HIS B:288 , HEC B:1301 , HOH B:2309 , HOH B:2310
BINDING SITE FOR RESIDUE HEC B1302
20
CC2
SOFTWARE
GLY A:27 , ALA A:29 , PRO A:32 , MET A:137 , MET A:142 , HOH A:2324 , THR B:237
BINDING SITE FOR RESIDUE GOL A1303
21
CC3
SOFTWARE
THR A:237 , GLY B:27 , ALA B:29 , LYS B:31 , PRO B:32 , MET B:137 , HOH B:2311 , HOH B:2312
BINDING SITE FOR RESIDUE GOL B1304
22
CC4
SOFTWARE
ARG A:256 , ASP B:77 , HIS B:81 , TRP B:126 , HEC B:1298 , HOH B:2313 , HOH B:2314 , HOH B:2315 , HOH B:2316
BINDING SITE FOR RESIDUE GOL B1305
23
CC5
SOFTWARE
GLU A:124 , HOH A:2130 , LYS B:121 , ARG B:231 , SER B:232 , PRO B:233 , HOH B:2317
BINDING SITE FOR RESIDUE GOL B1306
[
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]
SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
View:
Select:
Label:
Sorry, no Info available
[
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PROSITE Patterns/Profiles
(1, 2)
Info
All PROSITE Patterns/Profiles
1: MULTIHEME_CYTC (A:42-293,B:42-293)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
MULTIHEME_CYTC
PS51008
Multiheme cytochrome c family profile.
CYC9_DESDA
72-323
2
A:42-293
B:42-293
[
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]
Exons
(0, 0)
Info
All Exons
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All Exon Boundaries
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(1, 2)
Info
All SCOP Domains
1a: SCOP_d1ofwa_ (A:)
1b: SCOP_d1ofwb_ (B:)
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Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All alpha proteins
(14657)
Fold
:
Multiheme cytochromes
(149)
Superfamily
:
Multiheme cytochromes
(149)
Family
:
Cytochrome c3-like
(70)
Protein domain
:
Nine-heme cytochrome c
(4)
Desulfovibrio desulfuricans, ATCC 27774 [TaxId: 876]
(3)
1a
d1ofwa_
A:
1b
d1ofwb_
B:
[
close SCOP info
]
CATH Domains
(1, 4)
Info
all CATH domains
1a: CATH_1ofwA02 (A:1-99,A:130-167)
1b: CATH_1ofwA01 (A:100-129,A:168-292)
1c: CATH_1ofwB01 (B:100-129,B:168-292)
1d: CATH_1ofwB02 (B:1-99,B:130-167)
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)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
Alpha-Beta Complex
(3881)
Topology
:
Cytochrome C3
(62)
Homologous Superfamily
:
Cytochrome C3
(62)
Desulfovibrio desulfuricans. Organism_taxid: 876.
(8)
1a
1ofwA02
A:1-99,A:130-167
1b
1ofwA01
A:100-129,A:168-292
1c
1ofwB01
B:100-129,B:168-292
1d
1ofwB02
B:1-99,B:130-167
[
close CATH info
]
Pfam Domains
(1, 4)
Info
all PFAM domains
1a: PFAM_Cytochrom_CIII_1ofwB01 (B:180-290)
1b: PFAM_Cytochrom_CIII_1ofwB02 (B:180-290)
1c: PFAM_Cytochrom_CIII_1ofwB03 (B:180-290)
1d: PFAM_Cytochrom_CIII_1ofwB04 (B:180-290)
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Clan
:
Multiheme_cytos
(34)
Family
:
Cytochrom_CIII
(23)
Desulfovibrio desulfuricans (strain ATCC 27774 / DSM 6949)
(3)
1a
Cytochrom_CIII-1ofwB01
B:180-290
1b
Cytochrom_CIII-1ofwB02
B:180-290
1c
Cytochrom_CIII-1ofwB03
B:180-290
1d
Cytochrom_CIII-1ofwB04
B:180-290
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