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1OFE
Biol. Unit 1
Info
Asym.Unit (469 KB)
Biol.Unit 1 (235 KB)
Biol.Unit 2 (234 KB)
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(1)
Title
:
GLUTAMATE SYNTHASE FROM SYNECHOCYSTIS SP IN COMPLEX WITH 2-OXOGLUTARATE AND L-DON AT 2.45 ANGSTROM RESOLUTION
Authors
:
R. H. H. Van Den Heuvel, A. Mattevi
Date
:
14 Apr 03 (Deposition) - 11 Jun 03 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.45
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Keywords
:
Oxidoreductase, Complex Enzyme, Substrate Channeling, Amidotransferase, Flavoprotein, Iron-Sulphur, Fd-Gogat
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
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Reference
:
R. H. H. Van Den Heuvel, D. I. Svergun, M. V. Petoukhov, A. Coda, B. Curti, S. Ravasio, M. A. Vanoni, A. Mattevi
The Active Conformation Of Glutamate Synthase And Its Binding To Ferredoxin
J. Mol. Biol. V. 330 113 2003
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Hetero Components
(4, 4)
Info
All Hetero Components
1a: 2-OXOGLUTARIC ACID (AKGa)
1b: 2-OXOGLUTARIC ACID (AKGb)
2a: FE3-S4 CLUSTER (F3Sa)
2b: FE3-S4 CLUSTER (F3Sb)
3a: FLAVIN MONONUCLEOTIDE (FMNa)
3b: FLAVIN MONONUCLEOTIDE (FMNb)
4a: 5-OXO-L-NORLEUCINE (ONLa)
4b: 5-OXO-L-NORLEUCINE (ONLb)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
AKG
1
Ligand/Ion
2-OXOGLUTARIC ACID
2
F3S
1
Ligand/Ion
FE3-S4 CLUSTER
3
FMN
1
Ligand/Ion
FLAVIN MONONUCLEOTIDE
4
ONL
1
Ligand/Ion
5-OXO-L-NORLEUCINE
[
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Sites
(4, 4)
Info
All Sites
1: AC2 (SOFTWARE)
2: AC3 (SOFTWARE)
3: AC4 (SOFTWARE)
4: AC5 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
1
AC2
SOFTWARE
GLY A:874 , MET A:875 , SER A:876 , GLU A:903 , GLN A:944 , LYS A:966 , GLN A:969 , LYS A:1034 , GLY A:1063 , GLY A:1064 , THR A:1065 , GLY A:1066 , ASP A:1105 , GLY A:1106 , GLY A:1107 , GLY A:1128 , SER A:1129 , ILE A:1130 , MET A:1132 , HOH A:2152 , HOH A:2206 , AKG A:2510
BINDING SITE FOR RESIDUE FMN A2508
2
AC3
SOFTWARE
MET A:1132 , CYS A:1137 , ILE A:1138 , ARG A:1141 , VAL A:1142 , CYS A:1143 , CYS A:1148 , ALA A:1153
BINDING SITE FOR RESIDUE F3S A2509
3
AC4
SOFTWARE
SER A:876 , ALA A:879 , GLN A:969 , LYS A:972 , GLY A:977 , GLN A:978 , ARG A:992 , THR A:1065 , GLY A:1066 , ALA A:1067 , HOH A:2207 , HOH A:2208 , FMN A:2508
BINDING SITE FOR RESIDUE AKG A2510
4
AC5
SOFTWARE
CYS A:1 , ARG A:206 , PHE A:207 , GLN A:219 , HIS A:226 , ASN A:227 , GLY A:228 , GLU A:229 , ASP A:270 , SER A:271
BINDING SITE FOR RESIDUE ONL A2511
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are only available for the asymmetric unit)
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PROSITE Patterns/Profiles
(1, 1)
Info
All PROSITE Patterns/Profiles
1: GATASE_TYPE_2 (A:1-395)
;
View:
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
GATASE_TYPE_2
PS51278
Glutamine amidotransferase type 2 domain profile.
GLTS_SYNY3
37-431
1
A:1-395
-
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Exons
(0, 0)
Info
All Exons
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All Exon Boundaries
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(3, 6)
Info
All SCOP Domains
1a: SCOP_d1ofea1 (A:1240-1507)
1b: SCOP_d1ofeb1 (B:1240-1507)
2a: SCOP_d1ofea3 (A:1-430)
2b: SCOP_d1ofeb3 (B:1-430)
3a: SCOP_d1ofea2 (A:431-1239)
3b: SCOP_d1ofeb2 (B:431-1239)
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Folds
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(
)
Superfamilies
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)
(
)
Families
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)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All beta proteins
(24004)
Fold
:
Single-stranded right-handed beta-helix
(140)
Superfamily
:
Alpha subunit of glutamate synthase, C-terminal domain
(7)
Family
:
Alpha subunit of glutamate synthase, C-terminal domain
(7)
Protein domain
:
Alpha subunit of glutamate synthase, C-terminal domain
(7)
Synechocystis sp. [TaxId: 1143]
(5)
1a
d1ofea1
A:1240-1507
1b
d1ofeb1
B:1240-1507
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
Ntn hydrolase-like
(356)
Superfamily
:
N-terminal nucleophile aminohydrolases (Ntn hydrolases)
(352)
Family
:
Class II glutamine amidotransferases
(27)
Protein domain
:
Alpha subunit of glutamate synthase, N-terminal domain
(7)
Synechocystis sp. [TaxId: 1143]
(5)
2a
d1ofea3
A:1-430
2b
d1ofeb3
B:1-430
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
TIM beta/alpha-barrel
(3956)
Superfamily
:
FMN-linked oxidoreductases
(290)
Family
:
FMN-linked oxidoreductases
(242)
Protein domain
:
Alpha subunit of glutamate synthase, central and FMN domains
(7)
Synechocystis sp. [TaxId: 1143]
(5)
3a
d1ofea2
A:431-1239
3b
d1ofeb2
B:431-1239
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CATH Domains
(3, 8)
Info
all CATH domains
1a: CATH_1ofeA01 (A:1-421,A:525-533)
1b: CATH_1ofeB01 (B:1-422)
2a: CATH_1ofeA02 (A:422-470,A:482-524,A:534-786)
2b: CATH_1ofeB02 (B:423-786)
2c: CATH_1ofeB03 (B:787-1223)
2d: CATH_1ofeA03 (A:471-481,A:787-1244)
3a: CATH_1ofeA04 (A:1245-1507)
3b: CATH_1ofeB04 (B:1224-1503)
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)
Homologous Superfamilies
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)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
4-Layer Sandwich
(459)
Topology
:
Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1
(128)
Homologous Superfamily
:
Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1
(124)
Synechocystis sp.. Organism_taxid: 1148. Strain: pcc6803.
(2)
1a
1ofeA01
A:1-421,A:525-533
1b
1ofeB01
B:1-422
Architecture
:
Alpha-Beta Barrel
(2994)
Topology
:
TIM Barrel
(2806)
Homologous Superfamily
:
Aldolase class I
(887)
Synechocystis sp.. Organism_taxid: 1148. Strain: pcc6803.
(2)
2a
1ofeA02
A:422-470,A:482-524,A:534-786
2b
1ofeB02
B:423-786
2c
1ofeB03
B:787-1223
2d
1ofeA03
A:471-481,A:787-1244
Class
:
Mainly Beta
(13760)
Architecture
:
3 Solenoid
(196)
Topology
:
Pectate Lyase C-like
(105)
Homologous Superfamily
:
[code=2.160.20.60, no name defined]
(6)
Synechocystis sp.. Organism_taxid: 1148. Strain: pcc6803.
(2)
3a
1ofeA04
A:1245-1507
3b
1ofeB04
B:1224-1503
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Pfam Domains
(4, 8)
Info
all PFAM domains
1a: PFAM_GATase_2_1ofeB01 (B:1-368)
1b: PFAM_GATase_2_1ofeB02 (B:1-368)
2a: PFAM_Glu_syn_central_1ofeB03 (B:443-739)
2b: PFAM_Glu_syn_central_1ofeB04 (B:443-739)
3a: PFAM_Glu_synthase_1ofeB05 (B:795-1191)
3b: PFAM_Glu_synthase_1ofeB06 (B:795-1191)
4a: PFAM_GXGXG_1ofeB07 (B:1269-1464)
4b: PFAM_GXGXG_1ofeB08 (B:1269-1464)
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Clans
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)
(
)
Families
(
)
(
)
Organisms
(
)
(
)
Clan
:
NTN
(93)
Family
:
GATase_2
(9)
Synechocystis sp. (strain ATCC 27184 / PCC 6803 / N-1)
(5)
1a
GATase_2-1ofeB01
B:1-368
1b
GATase_2-1ofeB02
B:1-368
Clan
:
TIM_barrel
(694)
Family
:
Glu_syn_central
(5)
Synechocystis sp. (strain ATCC 27184 / PCC 6803 / N-1)
(5)
2a
Glu_syn_central-1ofeB03
B:443-739
2b
Glu_syn_central-1ofeB04
B:443-739
Family
:
Glu_synthase
(5)
Synechocystis sp. (strain ATCC 27184 / PCC 6803 / N-1)
(5)
3a
Glu_synthase-1ofeB05
B:795-1191
3b
Glu_synthase-1ofeB06
B:795-1191
Clan
:
no clan defined [family: GXGXG]
(5)
Family
:
GXGXG
(5)
Synechocystis sp. (strain ATCC 27184 / PCC 6803 / N-1)
(5)
4a
GXGXG-1ofeB07
B:1269-1464
4b
GXGXG-1ofeB08
B:1269-1464
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