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1OE0
Biol. Unit 1
Info
Asym.Unit (147 KB)
Biol.Unit 1 (72 KB)
Biol.Unit 2 (72 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF DROSOPHILA DEOXYRIBONUCLEOSIDE KINASE IN COMPLEX WITH DTTP
Authors
:
N. E. Mikkelsen, K. Johansson, A. Karlsson, W. Knecht, G. Andersen, J. Piskur, B. Munch-Petersen, H. Eklund
Date
:
17 Mar 03 (Deposition) - 23 Oct 03 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.40
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A,B (1x)
Biol. Unit 2: C,D (1x)
Keywords
:
Transferase, Drosophila, Deoxyribonucleoside Kinase, Dttp, Complex, Feedback Inhibition, Salvage Pathway
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Reference
:
N. E. Mikkelsen, K. Johansson, A. Karlsson, W. Knecht, G. Andersen, J. Piskur, B. Munch-Petersen, H. Eklund
Structural Basis For Feedback Inhibition Of The Deoxyribonucleoside Salvage Pathway:Studies Of The Drosophila Deoxyribonucleoside Kinase
Biochemistry V. 42 5706 2003
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Hetero Components
(1, 2)
Info
All Hetero Components
1a: MAGNESIUM ION (MGa)
1b: MAGNESIUM ION (MGb)
1c: MAGNESIUM ION (MGc)
1d: MAGNESIUM ION (MGd)
2a: THYMIDINE-5'-TRIPHOSPHATE (TTPa)
2b: THYMIDINE-5'-TRIPHOSPHATE (TTPb)
2c: THYMIDINE-5'-TRIPHOSPHATE (TTPc)
2d: THYMIDINE-5'-TRIPHOSPHATE (TTPd)
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No.
Name
Count
Type
Full Name
1
MG
-1
Ligand/Ion
MAGNESIUM ION
2
TTP
2
Ligand/Ion
THYMIDINE-5'-TRIPHOSPHATE
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Sites
(4, 4)
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All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC5 (SOFTWARE)
4: AC6 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
THR A:34 , GLU A:52 , GLU A:104 , TTP A:300 , HOH A:2033
BINDING SITE FOR RESIDUE MG A 400
2
AC2
SOFTWARE
THR B:34 , GLU B:52 , GLU B:104 , TTP B:300 , HOH B:2008
BINDING SITE FOR RESIDUE MG B 400
3
AC5
SOFTWARE
ILE A:29 , GLY A:30 , SER A:31 , GLY A:32 , LYS A:33 , THR A:34 , GLU A:52 , VAL A:54 , TRP A:57 , MET A:69 , TYR A:70 , PHE A:80 , GLN A:81 , VAL A:84 , GLU A:104 , ARG A:105 , ALA A:110 , PHE A:114 , ARG A:167 , ARG A:169 , GLU A:172 , MG A:400 , HOH A:2031 , HOH A:2033 , HOH A:2034
BINDING SITE FOR RESIDUE TTP A 300
4
AC6
SOFTWARE
ILE B:29 , GLY B:30 , SER B:31 , GLY B:32 , LYS B:33 , THR B:34 , GLU B:52 , VAL B:54 , TRP B:57 , MET B:69 , TYR B:70 , PHE B:80 , GLN B:81 , VAL B:84 , GLU B:104 , ARG B:105 , ALA B:110 , PHE B:114 , ARG B:167 , ARG B:169 , GLU B:172 , MG B:400 , HOH B:2008 , HOH B:2044 , HOH B:2048
BINDING SITE FOR RESIDUE TTP B 300
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SAPs(SNPs)/Variants
(0, 0)
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(mutated residues are only available for the asymmetric unit)
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Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
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SCOP Domains
(1, 4)
Info
All SCOP Domains
1a: SCOP_d1oe0a_ (A:)
1b: SCOP_d1oe0c_ (C:)
1c: SCOP_d1oe0d_ (D:)
1d: SCOP_d1oe0b_ (B:)
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Protein Domains
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Organisms
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Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
P-loop containing nucleoside triphosphate hydrolases
(2083)
Superfamily
:
P-loop containing nucleoside triphosphate hydrolases
(2083)
Family
:
Nucleotide and nucleoside kinases
(231)
Protein domain
:
Deoxyribonucleoside kinase
(11)
Fruit fly (Drosophila melanogaster) [TaxId: 7227]
(11)
1a
d1oe0a_
A:
1b
d1oe0c_
C:
1c
d1oe0d_
D:
1d
d1oe0b_
B:
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CATH Domains
(1, 4)
Info
all CATH domains
1a: CATH_1oe0A00 (A:12-210)
1b: CATH_1oe0B00 (B:12-210)
1c: CATH_1oe0C00 (C:12-210)
1d: CATH_1oe0D00 (D:12-210)
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)
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Class
:
Alpha Beta
(26913)
Architecture
:
3-Layer(aba) Sandwich
(12045)
Topology
:
Rossmann fold
(7312)
Homologous Superfamily
:
P-loop containing nucleotide triphosphate hydrolases
(1378)
Fruit fly (Drosophila melanogaster)
(15)
1a
1oe0A00
A:12-210
1b
1oe0B00
B:12-210
1c
1oe0C00
C:12-210
1d
1oe0D00
D:12-210
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Pfam Domains
(1, 4)
Info
all PFAM domains
1a: PFAM_dNK_1oe0D01 (D:80-210)
1b: PFAM_dNK_1oe0D02 (D:80-210)
1c: PFAM_dNK_1oe0D03 (D:80-210)
1d: PFAM_dNK_1oe0D04 (D:80-210)
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Clan
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P-loop_NTPase
(1112)
Family
:
dNK
(33)
Drosophila melanogaster (Fruit fly)
(13)
1a
dNK-1oe0D01
D:80-210
1b
dNK-1oe0D02
D:80-210
1c
dNK-1oe0D03
D:80-210
1d
dNK-1oe0D04
D:80-210
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Asymmetric Unit 1
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Asym.Unit (147 KB)
Header - Asym.Unit
Biol.Unit 1 (72 KB)
Header - Biol.Unit 1
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