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1OD8
Asym. Unit
Info
Asym.Unit (128 KB)
Biol.Unit 1 (123 KB)
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(1)
Title
:
XYLANASE XYN10A FROM STREPTOMYCES LIVIDANS IN COMPLEX WITH XYLOBIO-ISOFAGOMINE LACTAM
Authors
:
T. M. Gloster, S. Roberts, G. J. Davies
Date
:
14 Feb 03 (Deposition) - 08 Apr 03 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.05
Chains
:
Asym. Unit : A
Biol. Unit 1: A (1x)
Keywords
:
Hydrolase/Lectin, Glycoside Hydrolase Family 10, Xylanase, Xylan Degradation, Transition State Mimic, Isofagomine Lactam, Hydrolase, Lectin
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
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)
Reference
:
T. M. Gloster, S. J. Williams, C. Tarling, S. Roberts, C. Dupont, P. Jodoin, F. Shareck, S. G. Withers, G. J. Davies
A Xylobiose-Derived Isofagomine Lactam Glycosidase Inhibitor Binds As Its Amide Tautomer
Chem. Commun. (Camb. ) V. 8 944 2003
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Hetero Components
(4, 10)
Info
All Hetero Components
1a: IMIDAZOLE (IMDa)
1b: IMIDAZOLE (IMDb)
2a: SODIUM ION (NAa)
2b: SODIUM ION (NAb)
2c: SODIUM ION (NAc)
2d: SODIUM ION (NAd)
3a: XYLOSE-DERIVED ISOFAGOMINE LACTAM (XDLa)
3b: XYLOSE-DERIVED ISOFAGOMINE LACTAM (XDLb)
4a: BETA-D-XYLOPYRANOSE (XYPa)
4b: BETA-D-XYLOPYRANOSE (XYPb)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
IMD
2
Ligand/Ion
IMIDAZOLE
2
NA
4
Ligand/Ion
SODIUM ION
3
XDL
2
Ligand/Ion
XYLOSE-DERIVED ISOFAGOMINE LACTAM
4
XYP
2
Ligand/Ion
BETA-D-XYLOPYRANOSE
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Sites
(10, 10)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
View:
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No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
ASP A:132 , ASN A:173 , ASN A:209 , SER A:212 , ARG A:275 , XDL A:1306 , IMD A:1309 , HOH A:2465 , HOH A:2622
BINDING SITE FOR RESIDUE XYP A1307
02
AC2
SOFTWARE
GLU A:44 , ASN A:45 , LYS A:48 , GLN A:88 , TRP A:266 , TRP A:274 , XDL A:1310 , HOH A:2624 , HOH A:2625 , HOH A:2626 , HOH A:2628 , HOH A:2629
BINDING SITE FOR RESIDUE XYP A1311
03
AC3
SOFTWARE
THR A:294 , ASP A:298 , HOH A:2303 , HOH A:2609
BINDING SITE FOR RESIDUE NA A1303
04
AC4
SOFTWARE
ASP A:298 , GLY A:302 , GLY A:303
BINDING SITE FOR RESIDUE NA A1304
05
AC5
SOFTWARE
GLU A:2 , SER A:3 , ARG A:190 , HOH A:2014
BINDING SITE FOR RESIDUE NA A1305
06
AC6
SOFTWARE
ASN A:187 , HOH A:2102 , HOH A:2438 , HOH A:2441
BINDING SITE FOR RESIDUE NA A1312
07
AC7
SOFTWARE
ASP A:132 , ASN A:173 , GLY A:211 , XYP A:1307 , HOH A:2160 , HOH A:2349 , HOH A:2619 , HOH A:2620 , HOH A:2621
BINDING SITE FOR RESIDUE XDL A1306
08
AC8
SOFTWARE
GLY A:13 , GLN A:194 , ARG A:195 , GLY A:196 , SER A:258 , CYS A:260 , LEU A:261 , HOH A:2454 , HOH A:2623
BINDING SITE FOR RESIDUE IMD A1308
09
AC9
SOFTWARE
GLU A:128 , TYR A:172 , GLN A:205 , ARG A:275 , XYP A:1307 , XDL A:1310
BINDING SITE FOR RESIDUE IMD A1309
10
BC1
SOFTWARE
LYS A:48 , HIS A:81 , TRP A:85 , ASN A:127 , GLU A:128 , GLN A:205 , GLU A:236 , TRP A:274 , IMD A:1309 , XYP A:1311
BINDING SITE FOR RESIDUE XDL A1310
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
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PROSITE Patterns/Profiles
(1, 1)
Info
All PROSITE Patterns/Profiles
1: GH10_1 (A:229-239)
;
View:
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
GH10_1
PS00591
Glycosyl hydrolases family 10 (GH10) active site.
XYNA_STRLI
270-280
1
A:229-239
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Exons
(0, 0)
Info
All Exons
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(1, 1)
Info
All SCOP Domains
1a: SCOP_d1od8a_ (A:)
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)
Protein Domains
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)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
TIM beta/alpha-barrel
(3956)
Superfamily
:
(Trans)glycosidases
(1191)
Family
:
beta-glycanases
(284)
Protein domain
:
Xylanase A, catalytic core
(61)
Streptomyces lividans [TaxId: 1916]
(9)
1a
d1od8a_
A:
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CATH Domains
(1, 1)
Info
all CATH domains
1a: CATH_1od8A00 (A:2-303)
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)
Organisms
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)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
Alpha-Beta Barrel
(2994)
Topology
:
TIM Barrel
(2806)
Homologous Superfamily
:
Glycosidases
(843)
Streptomyces lividans. Organism_taxid: 1916.
(8)
1a
1od8A00
A:2-303
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Pfam Domains
(1, 1)
Info
all PFAM domains
1a: PFAM_Glyco_hydro_10_1od8A01 (A:4-300)
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Clans
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Clan
:
Glyco_hydro_tim
(488)
Family
:
Glyco_hydro_10
(42)
Streptomyces lividans
(4)
1a
Glyco_hydro_10-1od8A01
A:4-300
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Chain A
Asymmetric Unit 1
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