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1OCY
Asym. Unit
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Asym.Unit (89 KB)
Biol.Unit 1 (251 KB)
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(1)
Title
:
STRUCTURE OF THE RECEPTOR-BINDING DOMAIN OF THE BACTERIOPHAGE T4 SHORT TAIL FIBRE
Authors
:
E. Thomassen, G. Gielen, M. Schuetz, S. Miller, M. J. Van Raaij
Date
:
11 Feb 03 (Deposition) - 24 Jul 03 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.50
Chains
:
Asym. Unit : A
Biol. Unit 1: A (3x)
Keywords
:
Structural Protein, Fibrous Protein, Lipo-Polysaccharide Binding, Bacteriophage Structural Protein, Baseplate Protein, Gene Product 12
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
E. Thomassen, G. Gielen, M. Schuetz, G. Schoehn, J. P. Abrahams, S. Miller, M. J. Van Raaij
The Structure Of The Receptor-Binding Domain Of The Bacteriophage T4 Short Tail Fibre Reveals A Knitted Trimeric Metal-Binding Fold
J. Mol. Biol. V. 331 361 2003
(for further references see the
PDB file header
)
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Hetero Components
(3, 4)
Info
All Hetero Components
1a: CITRIC ACID (CITa)
2a: SULFATE ION (SO4a)
2b: SULFATE ION (SO4b)
3a: ZINC ION (ZNa)
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No.
Name
Count
Type
Full Name
1
CIT
1
Ligand/Ion
CITRIC ACID
2
SO4
2
Ligand/Ion
SULFATE ION
3
ZN
1
Ligand/Ion
ZINC ION
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Sites
(4, 4)
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All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
ARG A:464 , ARG A:465 , ARG A:480 , GLN A:495 , TYR A:500 , CIT A:1528 , HOH A:2470 , HOH A:2512 , HOH A:2513
BINDING SITE FOR RESIDUE SO4 A1529
2
AC2
SOFTWARE
SER A:386 , SER A:387 , HOH A:2514 , HOH A:2515 , HOH A:2516
BINDING SITE FOR RESIDUE SO4 A1530
3
AC3
SOFTWARE
HIS A:445 , HIS A:447
BINDING SITE FOR RESIDUE ZN A1531
4
AC4
SOFTWARE
GLY A:421 , TYR A:454 , ASP A:455 , ASP A:456 , ARG A:465 , ARG A:480 , PRO A:492 , ASN A:497 , SER A:498 , SO4 A:1529 , HOH A:2510 , HOH A:2511 , HOH A:2512
BINDING SITE FOR RESIDUE CIT A1528
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SAPs(SNPs)/Variants
(0, 0)
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(mutated residues are not available)
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PROSITE Patterns/Profiles
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Exons
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Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(1, 1)
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All SCOP Domains
1a: SCOP_d1ocya_ (A:)
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Protein Domains
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Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
Receptor-binding domain of short tail fibre protein gp12
(2)
Superfamily
:
Receptor-binding domain of short tail fibre protein gp12
(2)
Family
:
Receptor-binding domain of short tail fibre protein gp12
(2)
Protein domain
:
Receptor-binding domain of short tail fibre protein gp12
(2)
Bacteriophage T4 [TaxId: 10665]
(2)
1a
d1ocya_
A:
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CATH Domains
(2, 2)
Info
all CATH domains
1a: CATH_1ocyA01 (A:330-396,A:519-527)
2a: CATH_1ocyA02 (A:397-518)
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Class
:
Alpha Beta
(26913)
Architecture
:
Alpha-Beta Complex
(3881)
Topology
:
heat- and protease-stable fragment of the bacteriophage t4 short fibre, domain 3
(2)
Homologous Superfamily
:
heat- and protease-stable fragment of the bacteriophage t4 short fibre, domain 3
(2)
Bacteriophage t4. Organism_taxid: 10665. Strain: d.
(1)
1a
1ocyA01
A:330-396,A:519-527
Class
:
Few Secondary Structures
(1120)
Architecture
:
Irregular
(1120)
Topology
:
receptor-binding domain of the bacteriophage t4 short tail fibre, domain 2
(1)
Homologous Superfamily
:
receptor-binding domain of the bacteriophage t4 short tail fibre, domain 2
(1)
Bacteriophage t4. Organism_taxid: 10665. Strain: d.
(1)
2a
1ocyA02
A:397-518
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Pfam Domains
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Asymmetric Unit 1
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