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1OCB
Asym. Unit
Info
Asym.Unit (140 KB)
Biol.Unit 1 (69 KB)
Biol.Unit 2 (68 KB)
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(1)
Title
:
STRUCTURE OF THE WILD-TYPE CELLOBIOHYDROLASE CEL6A FROM HUMICOLAS INSOLENS IN COMPLEX WITH A FLUORESCENT SUBSTRATE
Authors
:
A. Varrot, T. P. Frandsen, I. Von Ossowski, V. Boyer, H. Driguez, M. Sch G. J. Davies
Date
:
07 Feb 03 (Deposition) - 10 Jul 03 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.75
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Keywords
:
Hydrolase, Cellulose Degradation, Cellobiohydrolase, Cellulase, Glycoside Hydrolase Family 6, Processive Mechanism
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
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)
Reference
:
A. Varrot, T. P. Frandsen, I. Von Ossowski, V. Boyer, H. Driguez, M. Schulein, G. J. Davies
Structural Basis For Ligand Binding And Processivity In Cellobiohydrolase Cel6A From Humicola Insolens
Structure V. 11 855 2003
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Hetero Components
(6, 19)
Info
All Hetero Components
1a: BETA-D-GLUCOSE (BGCa)
1b: BETA-D-GLUCOSE (BGCb)
1c: BETA-D-GLUCOSE (BGCc)
1d: BETA-D-GLUCOSE (BGCd)
1e: BETA-D-GLUCOSE (BGCe)
1f: BETA-D-GLUCOSE (BGCf)
1g: BETA-D-GLUCOSE (BGCg)
1h: BETA-D-GLUCOSE (BGCh)
2a: FLUORESCEINYLTHIOUREIDO (FLGa)
3a: 4-DEOXY-4-AMINO-BETA-D-GLUCOSE (GDAa)
3b: 4-DEOXY-4-AMINO-BETA-D-GLUCOSE (GDAb)
4a: GLYCEROL (GOLa)
4b: GLYCEROL (GOLb)
5a: O1-METHYL-4-DEOXY-4-THIO-BETA-D-GL... (GTMa)
5b: O1-METHYL-4-DEOXY-4-THIO-BETA-D-GL... (GTMb)
5c: O1-METHYL-4-DEOXY-4-THIO-BETA-D-GL... (GTMc)
5d: O1-METHYL-4-DEOXY-4-THIO-BETA-D-GL... (GTMd)
6a: N-ACETYL-D-GLUCOSAMINE (NAGa)
6b: N-ACETYL-D-GLUCOSAMINE (NAGb)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
BGC
8
Ligand/Ion
BETA-D-GLUCOSE
2
FLG
1
Ligand/Ion
FLUORESCEINYLTHIOUREIDO
3
GDA
2
Ligand/Ion
4-DEOXY-4-AMINO-BETA-D-GLUCOSE
4
GOL
2
Ligand/Ion
GLYCEROL
5
GTM
4
Ligand/Ion
O1-METHYL-4-DEOXY-4-THIO-BETA-D-GLUCOSE
6
NAG
2
Ligand/Ion
N-ACETYL-D-GLUCOSAMINE
[
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Sites
(19, 19)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
18: BC9 (SOFTWARE)
19: CC1 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
ASN A:141 , ASP A:145 , ASN A:199 , HOH A:2059 , HOH A:2060 , HOH A:2151 , HOH A:2388 , HOH A:2389 , HOH A:2390 , HOH A:2391
BINDING SITE FOR RESIDUE NAG A 451
02
AC2
SOFTWARE
THR A:233 , GLY A:273 , TRP A:274 , TRP A:277 , ASN A:280 , GTM A:452 , BGC A:454 , HOH A:2395 , HOH A:2396
BINDING SITE FOR RESIDUE BGC A 453
03
AC3
SOFTWARE
ASN A:234 , HIS A:271 , GLY A:273 , ASN A:310 , GLY A:369 , TRP A:371 , BGC A:453 , GDA A:455 , HOH A:2308 , HOH A:2396 , HOH A:2397
BINDING SITE FOR RESIDUE BGC A 454
04
AC4
SOFTWARE
ASP A:139 , ARG A:140 , GLU A:403 , GLY A:432 , GTM A:456 , BGC A:458 , HOH A:2401 , HOH A:2403
BINDING SITE FOR RESIDUE BGC A 457
05
AC5
SOFTWARE
ARG A:140 , LEU A:147 , GLN A:433 , BGC A:457 , HOH A:2366
BINDING SITE FOR RESIDUE BGC A 458
06
AC6
SOFTWARE
ASP B:119 , ASN B:141 , ASP B:145 , ASN B:199 , HOH B:2046 , HOH B:2112 , HOH B:2297
BINDING SITE FOR RESIDUE NAG B 451
07
AC7
SOFTWARE
THR B:233 , GLY B:273 , TRP B:274 , TRP B:277 , ASN B:280 , GTM B:452 , BGC B:454 , HOH B:2300 , HOH B:2301
BINDING SITE FOR RESIDUE BGC B 453
08
AC8
SOFTWARE
ASN B:234 , HIS B:271 , GLY B:273 , TRP B:274 , ASN B:310 , GLY B:369 , TRP B:371 , BGC B:453 , GDA B:455 , HOH B:2229 , HOH B:2301 , HOH B:2302
BINDING SITE FOR RESIDUE BGC B 454
09
AC9
SOFTWARE
ASP B:139 , ARG B:140 , GLU B:403 , GLY B:432 , GTM B:456 , BGC B:458 , FLG B:460 , HOH B:2308 , HOH B:2309 , HOH B:2310
BINDING SITE FOR RESIDUE BGC B 457
10
BC1
SOFTWARE
ARG B:140 , LEU B:147 , GLN B:433 , BGC B:457 , FLG B:460 , HOH B:2014 , HOH B:2280 , HOH B:2310
BINDING SITE FOR RESIDUE BGC B 458
11
BC2
SOFTWARE
TRP A:277 , PRO A:325 , BGC A:453 , HOH A:2393 , HOH A:2394
BINDING SITE FOR RESIDUE GTM A 452
12
BC3
SOFTWARE
TRP A:137 , ASP A:139 , SER A:186 , LYS A:399 , PRO A:400 , GLU A:403 , GLY A:432 , BGC A:457 , HOH A:2347
BINDING SITE FOR RESIDUE GTM A 456
13
BC4
SOFTWARE
TRP B:277 , ALA B:279 , BGC B:453 , HOH B:2298 , HOH B:2299
BINDING SITE FOR RESIDUE GTM B 452
14
BC5
SOFTWARE
TRP B:137 , ASP B:139 , SER B:186 , LYS B:399 , PRO B:400 , GLU B:403 , GLY B:432 , BGC B:457 , HOH B:2264
BINDING SITE FOR RESIDUE GTM B 456
15
BC6
SOFTWARE
ASP A:180 , ASP A:226 , HIS A:271 , ASN A:310 , TRP A:371 , BGC A:454 , HOH A:2122 , HOH A:2124 , HOH A:2194 , HOH A:2398 , HOH A:2399 , HOH A:2400
BINDING SITE FOR RESIDUE GDA A 455
16
BC7
SOFTWARE
ASP B:180 , ASP B:226 , HIS B:271 , ASN B:310 , TRP B:371 , BGC B:454 , HOH B:2085 , HOH B:2142 , HOH B:2303 , HOH B:2304 , HOH B:2305 , HOH B:2306
BINDING SITE FOR RESIDUE GDA B 455
17
BC8
SOFTWARE
ASN A:103 , GLN A:150 , GLU A:154 , ASN B:103 , TYR B:104 , SER B:107 , GLU B:108 , LEU B:147 , GLN B:150 , BGC B:457 , BGC B:458
BINDING SITE FOR RESIDUE FLG B 460
18
BC9
SOFTWARE
TRP A:100 , ALA A:101 , ARG A:106 , HOH A:2011 , HOH A:2014 , HOH A:2111 , HOH A:2404 , HIS B:110
BINDING SITE FOR RESIDUE GOL A 459
19
CC1
SOFTWARE
HIS A:110 , HOH A:2018 , LEU B:99 , TRP B:100 , ALA B:101 , ARG B:106 , TYR B:167 , HOH B:2010
BINDING SITE FOR RESIDUE GOL B 459
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
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PROSITE Patterns/Profiles
(2, 4)
Info
All PROSITE Patterns/Profiles
1: GLYCOSYL_HYDROL_F6_1 (A:172-188,B:172-188)
2: GLYCOSYL_HYDROL_F6_2 (A:220-229,B:220-229)
;
View:
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
GLYCOSYL_HYDROL_F6_1
PS00655
Glycosyl hydrolases family 6 signature 1.
GUX6_HUMIN
198-214
2
A:172-188
B:172-188
2
GLYCOSYL_HYDROL_F6_2
PS00656
Glycosyl hydrolases family 6 signature 2.
GUX6_HUMIN
246-255
2
A:220-229
B:220-229
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Exons
(0, 0)
Info
All Exons
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All Exon Boundaries
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(1, 2)
Info
All SCOP Domains
1a: SCOP_d1ocba_ (A:)
1b: SCOP_d1ocbb_ (B:)
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(
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Folds
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Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
7-stranded beta/alpha barrel
(137)
Superfamily
:
Glycosyl hydrolases family 6, cellulases
(42)
Family
:
Glycosyl hydrolases family 6, cellulases
(34)
Protein domain
:
Cellobiohydrolase II (Cel6)
(17)
Humicola insolens, Cel6a [TaxId: 34413]
(9)
1a
d1ocba_
A:
1b
d1ocbb_
B:
[
close SCOP info
]
CATH Domains
(1, 2)
Info
all CATH domains
1a: CATH_1ocbA00 (A:90-450)
1b: CATH_1ocbB00 (B:90-450)
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Classes
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Organisms
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(
)
Class
:
Alpha Beta
(26913)
Architecture
:
Alpha-Beta Barrel
(2994)
Topology
:
TIM Barrel
(2806)
Homologous Superfamily
:
7-stranded glycosidases (cellulases)
(28)
Humicola insolens. Organism_taxid: 34413.
(9)
1a
1ocbA00
A:90-450
1b
1ocbB00
B:90-450
[
close CATH info
]
Pfam Domains
(1, 2)
Info
all PFAM domains
1a: PFAM_Glyco_hydro_6_1ocbB01 (B:101-417)
1b: PFAM_Glyco_hydro_6_1ocbB02 (B:101-417)
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Clans
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(
)
Organisms
(
)
(
)
Clan
:
no clan defined [family: Glyco_hydro_6]
(10)
Family
:
Glyco_hydro_6
(10)
Humicola insolens (Soft-rot fungus)
(5)
1a
Glyco_hydro_6-1ocbB01
B:101-417
1b
Glyco_hydro_6-1ocbB02
B:101-417
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