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1OC7
Asym. Unit
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Asym.Unit (149 KB)
Biol.Unit 1 (142 KB)
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(1)
Title
:
D405N MUTANT OF THE CELLOBIOHYDROLASE CEL6A FROM HUMICOLA INSOLENS IN COMPLEX WITH METHYL-TETRATHIO-ALPHA-D-CELLOPENTOSIDE AT 1.1 ANGSTROM RESOLUTION
Authors
:
A. Varrot, T. P. Frandsen, I. Von Ossowski, V. Boyer, H. Driguez, M. Schulein, G. J. Davies
Date
:
06 Feb 03 (Deposition) - 10 Jul 03 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.11
Chains
:
Asym. Unit : A
Biol. Unit 1: A (1x)
Keywords
:
Hydrolase, Cellulose Degradation, Cellobiohydrolase, Cellulase, Glycoside Hydrolase Family 6, Processive Mechanism
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
A. Varrot, T. P. Frandsen, I. Von Ossowski, V. Boyer, H. Driguez, M. Schulein, G. J. Davies
Structural Basis For Ligand Binding And Processivity In Cellobiohydrolase Cel6A From Humicola Insolens
Structure V. 11 855 2003
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Hetero Components
(8, 12)
Info
All Hetero Components
1a: ACETATE ION (ACTa)
2a: BETA-D-GLUCOSE (BGCa)
3a: DIMETHYLFORMAMIDE (DMFa)
3b: DIMETHYLFORMAMIDE (DMFb)
4a: GLYCEROL (GOLa)
4b: GLYCEROL (GOLb)
5a: O1-METHYL-4-DEOXY-4-THIO-ALPHA-D-G... (MA3a)
6a: MAGNESIUM ION (MGa)
7a: N-ACETYL-D-GLUCOSAMINE (NAGa)
8a: 4-DEOXY-4-THIO-BETA-D-GLUCOPYRANOS... (SGCa)
8b: 4-DEOXY-4-THIO-BETA-D-GLUCOPYRANOS... (SGCb)
8c: 4-DEOXY-4-THIO-BETA-D-GLUCOPYRANOS... (SGCc)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
ACT
1
Ligand/Ion
ACETATE ION
2
BGC
1
Ligand/Ion
BETA-D-GLUCOSE
3
DMF
2
Ligand/Ion
DIMETHYLFORMAMIDE
4
GOL
2
Ligand/Ion
GLYCEROL
5
MA3
1
Ligand/Ion
O1-METHYL-4-DEOXY-4-THIO-ALPHA-D-GLUCOSE
6
MG
1
Ligand/Ion
MAGNESIUM ION
7
NAG
1
Ligand/Ion
N-ACETYL-D-GLUCOSAMINE
8
SGC
3
Ligand/Ion
4-DEOXY-4-THIO-BETA-D-GLUCOPYRANOSE
[
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Sites
(12, 12)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
View:
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Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
ASN A:141 , ASP A:145 , ASN A:199 , GLU A:367 , HIS A:370 , LEU A:421 , HOH A:2105 , HOH A:2106 , HOH A:2238 , HOH A:2460 , HOH A:2527 , HOH A:2573 , HOH A:2574 , HOH A:2575 , HOH A:2577
BINDING SITE FOR RESIDUE NAG A 500
02
AC2
SOFTWARE
TRP A:137 , TYR A:174 , ASN A:187 , ALA A:309 , SGC A:602 , HOH A:2205 , HOH A:2586 , HOH A:2587 , HOH A:2588 , HOH A:2589 , HOH A:2590
BINDING SITE FOR RESIDUE BGC A 601
03
AC3
SOFTWARE
ALA A:183 , ASN A:310 , TRP A:371 , BGC A:601 , SGC A:603 , HOH A:2396 , HOH A:2465 , HOH A:2525 , HOH A:2591 , HOH A:2592 , HOH A:2593
BINDING SITE FOR RESIDUE SGC A 602
04
AC4
SOFTWARE
ASN A:234 , HIS A:271 , TRP A:274 , SGC A:602 , SGC A:604 , HOH A:2308 , HOH A:2463 , HOH A:2592 , HOH A:2593 , HOH A:2594 , HOH A:2595 , HOH A:2596 , HOH A:2597
BINDING SITE FOR RESIDUE SGC A 603
05
AC5
SOFTWARE
TRP A:274 , ASN A:280 , GLY A:369 , SGC A:603 , MA3 A:605 , HOH A:2462 , HOH A:2595 , HOH A:2597 , HOH A:2598 , HOH A:2599 , HOH A:2600 , HOH A:2601 , HOH A:2603
BINDING SITE FOR RESIDUE SGC A 604
06
AC6
SOFTWARE
GLU A:189 , TRP A:277 , ALA A:279 , SGC A:604 , HOH A:2370 , HOH A:2598 , HOH A:2599 , HOH A:2602 , HOH A:2603
BINDING SITE FOR RESIDUE MA3 A 605
07
AC7
SOFTWARE
HOH A:2019 , HOH A:2048 , HOH A:2073 , HOH A:2168 , HOH A:2578 , HOH A:2581
BINDING SITE FOR RESIDUE MG A 501
08
AC8
SOFTWARE
GLN A:98 , LEU A:99 , PRO A:133 , HOH A:2019 , HOH A:2578 , HOH A:2579 , HOH A:2580
BINDING SITE FOR RESIDUE ACT A 502
09
AC9
SOFTWARE
TRP A:100 , ALA A:101 , ARG A:106 , GLU A:131 , TYR A:167 , HOH A:2581
BINDING SITE FOR RESIDUE DMF A 503
10
BC1
SOFTWARE
GLU A:336 , HIS A:389 , TYR A:391 , ARG A:444 , ASN A:445 , HOH A:2582
BINDING SITE FOR RESIDUE DMF A 504
11
BC2
SOFTWARE
TYR A:292 , VAL A:301 , ARG A:302 , PHE A:347 , PRO A:348 , HOH A:2583
BINDING SITE FOR RESIDUE GOL A 505
12
BC3
SOFTWARE
ALA A:313 , TRP A:314 , SER A:315 , GLN A:355 , SER A:358 , GLY A:359 , ASN A:447 , HOH A:2584 , HOH A:2585
BINDING SITE FOR RESIDUE GOL A 506
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
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Sorry, no Info available
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PROSITE Patterns/Profiles
(2, 2)
Info
All PROSITE Patterns/Profiles
1: GLYCOSYL_HYDROL_F6_1 (A:172-188)
2: GLYCOSYL_HYDROL_F6_2 (A:220-229)
;
View:
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
GLYCOSYL_HYDROL_F6_1
PS00655
Glycosyl hydrolases family 6 signature 1.
GUX6_HUMIN
198-214
1
A:172-188
2
GLYCOSYL_HYDROL_F6_2
PS00656
Glycosyl hydrolases family 6 signature 2.
GUX6_HUMIN
246-255
1
A:220-229
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Exons
(0, 0)
Info
All Exons
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All Exon Boundaries
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(1, 1)
Info
All SCOP Domains
1a: SCOP_d1oc7a_ (A:)
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(
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(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
7-stranded beta/alpha barrel
(137)
Superfamily
:
Glycosyl hydrolases family 6, cellulases
(42)
Family
:
Glycosyl hydrolases family 6, cellulases
(34)
Protein domain
:
Cellobiohydrolase II (Cel6)
(17)
Humicola insolens, Cel6a [TaxId: 34413]
(9)
1a
d1oc7a_
A:
[
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CATH Domains
(1, 1)
Info
all CATH domains
1a: CATH_1oc7A00 (A:87-450)
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(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
Alpha-Beta Barrel
(2994)
Topology
:
TIM Barrel
(2806)
Homologous Superfamily
:
7-stranded glycosidases (cellulases)
(28)
Humicola insolens. Organism_taxid: 34413.
(9)
1a
1oc7A00
A:87-450
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Pfam Domains
(1, 1)
Info
all PFAM domains
1a: PFAM_Glyco_hydro_6_1oc7A01 (A:101-417)
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Clans
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(
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Organisms
(
)
(
)
Clan
:
no clan defined [family: Glyco_hydro_6]
(10)
Family
:
Glyco_hydro_6
(10)
Humicola insolens (Soft-rot fungus)
(5)
1a
Glyco_hydro_6-1oc7A01
A:101-417
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Chain A
Asymmetric Unit 1
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