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1OC6
Asym. Unit
Info
Asym.Unit (141 KB)
Biol.Unit 1 (135 KB)
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(1)
Title
:
STRUCTURE NATIVE OF THE D405N MUTANT OF THE CELLOBIOHYDROLASE CEL6A FROM HUMICOLA INSOLENS AT 1.5 ANGSTROM RESOLUTION
Authors
:
A. Varrot, T. P. Frandsen, I. Von Ossowski, V. Boyer, H. Driguez, M. Schulein, G. J. Davies
Date
:
06 Feb 03 (Deposition) - 10 Jul 03 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.50
Chains
:
Asym. Unit : A
Biol. Unit 1: A (1x)
Keywords
:
Hydrolase, Cellulose Degradation, Cellobiohydrolase, Cellulase, Glycoside Hydrolase Family 6, Processive Mechanism
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Reference
:
A. Varrot, T. P. Frandsen, I. Von Ossowski, V. Boyer, H. Driguez, M. Schulein, G. J. Davies
Structural Basis For Ligand Binding And Processivity In Cellobiohydrolase Cel6A From Humicola Insolens
Structure V. 11 855 2003
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Hetero Components
(3, 9)
Info
All Hetero Components
1a: CALCIUM ION (CAa)
2a: GLYCEROL (GOLa)
2b: GLYCEROL (GOLb)
2c: GLYCEROL (GOLc)
2d: GLYCEROL (GOLd)
2e: GLYCEROL (GOLe)
2f: GLYCEROL (GOLf)
2g: GLYCEROL (GOLg)
3a: N-ACETYL-D-GLUCOSAMINE (NAGa)
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Label:
No.
Name
Count
Type
Full Name
1
CA
1
Ligand/Ion
CALCIUM ION
2
GOL
7
Ligand/Ion
GLYCEROL
3
NAG
1
Ligand/Ion
N-ACETYL-D-GLUCOSAMINE
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Sites
(9, 9)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
5: AC5 (SOFTWARE)
6: AC6 (SOFTWARE)
7: AC7 (SOFTWARE)
8: AC8 (SOFTWARE)
9: AC9 (SOFTWARE)
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Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
ASN A:141 , ASP A:145 , ASN A:199 , GLU A:367 , HIS A:370 , LEU A:421 , HOH A:2064 , HOH A:2066 , HOH A:2153 , HOH A:2333 , HOH A:2404 , HOH A:2445 , HOH A:2447 , HOH A:2448 , HOH A:2449
BINDING SITE FOR RESIDUE NAG A 500
2
AC2
SOFTWARE
GLU A:367 , HOH A:2154 , HOH A:2173 , HOH A:2293 , HOH A:2332 , HOH A:2335
BINDING SITE FOR RESIDUE CA A 501
3
AC3
SOFTWARE
ALA A:313 , TRP A:314 , SER A:315 , GLN A:355 , SER A:358 , GLY A:359 , ASN A:447 , HOH A:2450 , HOH A:2451
BINDING SITE FOR RESIDUE GOL A 510
4
AC4
SOFTWARE
TYR A:104 , GLN A:136 , TRP A:137 , ASP A:139 , ARG A:140 , LEU A:147 , GLU A:403 , HOH A:2374 , HOH A:2422 , HOH A:2452 , HOH A:2453
BINDING SITE FOR RESIDUE GOL A 511
5
AC5
SOFTWARE
ASN A:234 , TRP A:274 , HOH A:2454 , HOH A:2455 , HOH A:2456 , HOH A:2457
BINDING SITE FOR RESIDUE GOL A 512
6
AC6
SOFTWARE
TYR A:292 , ARG A:302 , PHE A:347 , PRO A:348 , GLN A:350
BINDING SITE FOR RESIDUE GOL A 514
7
AC7
SOFTWARE
ARG A:140 , THR A:146 , ALA A:182 , VAL A:237 , HOH A:2061 , HOH A:2403 , HOH A:2459 , HOH A:2460
BINDING SITE FOR RESIDUE GOL A 515
8
AC8
SOFTWARE
ASN A:310 , HOH A:2461 , HOH A:2463 , HOH A:2464 , HOH A:2465
BINDING SITE FOR RESIDUE GOL A 516
9
AC9
SOFTWARE
PHE A:94 , GLU A:95 , GLY A:96 , VAL A:97 , HOH A:2354 , HOH A:2356
BINDING SITE FOR RESIDUE GOL A 517
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
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PROSITE Patterns/Profiles
(2, 2)
Info
All PROSITE Patterns/Profiles
1: GLYCOSYL_HYDROL_F6_1 (A:172-188)
2: GLYCOSYL_HYDROL_F6_2 (A:220-229)
;
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
GLYCOSYL_HYDROL_F6_1
PS00655
Glycosyl hydrolases family 6 signature 1.
GUX6_HUMIN
198-214
1
A:172-188
2
GLYCOSYL_HYDROL_F6_2
PS00656
Glycosyl hydrolases family 6 signature 2.
GUX6_HUMIN
246-255
1
A:220-229
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Exons
(0, 0)
Info
All Exons
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All Exon Boundaries
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(1, 1)
Info
All SCOP Domains
1a: SCOP_d1oc6a_ (A:)
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)
Protein Domains
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)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
7-stranded beta/alpha barrel
(137)
Superfamily
:
Glycosyl hydrolases family 6, cellulases
(42)
Family
:
Glycosyl hydrolases family 6, cellulases
(34)
Protein domain
:
Cellobiohydrolase II (Cel6)
(17)
Humicola insolens, Cel6a [TaxId: 34413]
(9)
1a
d1oc6a_
A:
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CATH Domains
(1, 1)
Info
all CATH domains
1a: CATH_1oc6A00 (A:87-450)
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)
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)
Organisms
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)
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)
Class
:
Alpha Beta
(26913)
Architecture
:
Alpha-Beta Barrel
(2994)
Topology
:
TIM Barrel
(2806)
Homologous Superfamily
:
7-stranded glycosidases (cellulases)
(28)
Humicola insolens. Organism_taxid: 34413.
(9)
1a
1oc6A00
A:87-450
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Pfam Domains
(1, 1)
Info
all PFAM domains
1a: PFAM_Glyco_hydro_6_1oc6A01 (A:101-417)
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Clans
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)
Clan
:
no clan defined [family: Glyco_hydro_6]
(10)
Family
:
Glyco_hydro_6
(10)
Humicola insolens (Soft-rot fungus)
(5)
1a
Glyco_hydro_6-1oc6A01
A:101-417
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Asymmetric Unit 1
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