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1OBB
Asym. Unit
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Asym.Unit (178 KB)
Biol.Unit 1 (172 KB)
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(1)
Title
:
ALPHA-GLUCOSIDASE A, AGLA, FROM THERMOTOGA MARITIMA IN COMPLEX WITH MALTOSE AND NAD+
Authors
:
J. A. Lodge, T. Maier, W. Liebl, V. Hoffmann, N. Strater
Date
:
29 Jan 03 (Deposition) - 21 May 03 (Release) - 05 Nov 14 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.90
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A,B (1x)
Keywords
:
Glycosidase, Sulfinic Acid, Nad+, Maltose, Hydrolase
(Keyword Search:
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Reference
:
J. A. Lodge, T. Maier, W. Liebl, V. Hoffmann, N. Strater
Crystal Structure Of Thermotoga Maritima Alpha-Glucosidase Agla Defines A New Clan Of Nad+-Dependent Glycosidases
J. Biol. Chem. V. 278 19151 2003
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Hetero Components
(3, 6)
Info
All Hetero Components
1a: 3-SULFINOALANINE (CSDa)
1b: 3-SULFINOALANINE (CSDb)
2a: MALTOSE (MALa)
2b: MALTOSE (MALb)
3a: NICOTINAMIDE-ADENINE-DINUCLEOTIDE (NADa)
3b: NICOTINAMIDE-ADENINE-DINUCLEOTIDE (NADb)
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Label:
No.
Name
Count
Type
Full Name
1
CSD
2
Mod. Amino Acid
3-SULFINOALANINE
2
MAL
2
Ligand/Ion
MALTOSE
3
NAD
2
Ligand/Ion
NICOTINAMIDE-ADENINE-DINUCLEOTIDE
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Sites
(4, 4)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
VAL A:117 , ASP A:119 , ASN A:153 , HIS A:175 , HIS A:203 , PHE A:238 , ASP A:260 , ARG A:263 , TRP A:293 , NAD A:500
BINDING SITE FOR RESIDUE MAL A 900
2
AC2
SOFTWARE
VAL B:117 , ASP B:119 , ASN B:153 , CSD B:174 , HIS B:203 , PHE B:238 , ASP B:260 , ARG B:263 , TRP B:293 , TYR B:296 , NAD B:500 , HOH B:2317
BINDING SITE FOR RESIDUE MAL B 900
3
AC3
SOFTWARE
GLY A:10 , GLY A:12 , SER A:13 , MET A:38 , ASP A:39 , ILE A:40 , ARG A:44 , THR A:84 , ALA A:85 , MET A:86 , GLY A:89 , HIS A:90 , ASP A:119 , TYR A:131 , ALA A:152 , ASN A:153 , HIS A:175 , TYR A:296 , MAL A:900 , HOH A:2054 , HOH A:2057 , HOH A:2086 , HOH A:2327 , HOH A:2328 , HOH A:2329
BINDING SITE FOR RESIDUE NAD A 500
4
AC4
SOFTWARE
GLY B:10 , GLY B:12 , SER B:13 , MET B:38 , ASP B:39 , ILE B:40 , ASP B:41 , ARG B:44 , THR B:84 , ALA B:85 , MET B:86 , GLY B:89 , HIS B:90 , ASP B:119 , GLN B:128 , TYR B:131 , ALA B:151 , ASN B:153 , ILE B:155 , PHE B:173 , MAL B:900 , HOH B:2090 , HOH B:2091 , HOH B:2314 , HOH B:2315 , HOH B:2316 , HOH B:2317
BINDING SITE FOR RESIDUE NAD B 500
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SAPs(SNPs)/Variants
(0, 0)
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(mutated residues are not available)
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PROSITE Patterns/Profiles
(1, 2)
Info
All PROSITE Patterns/Profiles
1: GLYCOSYL_HYDROL_F4 (A:144-174,B:144-174)
;
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PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
GLYCOSYL_HYDROL_F4
PS01324
Glycosyl hydrolases family 4 signature.
AGLA_THEMA
144-174
2
A:144-174
B:144-174
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Exons
(0, 0)
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(2, 4)
Info
All SCOP Domains
1a: SCOP_d1obba2 (A:173-480)
1b: SCOP_d1obbb2 (B:173-480)
2a: SCOP_d1obba1 (A:2-172)
2b: SCOP_d1obbb1 (B:4-172)
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Protein Domains
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Organisms
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)
(
)
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
LDH C-terminal domain-like
(172)
Superfamily
:
LDH C-terminal domain-like
(172)
Family
:
AglA-like glucosidase
(9)
Protein domain
:
Alpha-glucosidase AglA
(1)
Thermotoga maritima [TaxId: 2336]
(1)
1a
d1obba2
A:173-480
1b
d1obbb2
B:173-480
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
NAD(P)-binding Rossmann-fold domains
(1604)
Superfamily
:
NAD(P)-binding Rossmann-fold domains
(1604)
Family
:
LDH N-terminal domain-like
(117)
Protein domain
:
Alpha-glucosidase AglA
(1)
Thermotoga maritima [TaxId: 2336]
(1)
2a
d1obba1
A:2-172
2b
d1obbb1
B:4-172
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CATH Domains
(0, 0)
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all CATH domains
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Pfam Domains
(2, 4)
Info
all PFAM domains
1a: PFAM_Glyco_hydro_4C_1obbB01 (B:192-451)
1b: PFAM_Glyco_hydro_4C_1obbB02 (B:192-451)
2a: PFAM_Glyco_hydro_4_1obbB03 (B:5-190)
2b: PFAM_Glyco_hydro_4_1obbB04 (B:5-190)
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Clan
:
LDH_C
(56)
Family
:
Glyco_hydro_4C
(5)
Thermotoga maritima
(4)
1a
Glyco_hydro_4C-1obbB01
B:192-451
1b
Glyco_hydro_4C-1obbB02
B:192-451
Clan
:
NADP_Rossmann
(1239)
Family
:
Glyco_hydro_4
(5)
Thermotoga maritima
(4)
2a
Glyco_hydro_4-1obbB03
B:5-190
2b
Glyco_hydro_4-1obbB04
B:5-190
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Asymmetric Unit 1
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Asym.Unit (178 KB)
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