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1OAT
Asym. Unit
Info
Asym.Unit (207 KB)
Biol.Unit 1 (135 KB)
Biol.Unit 2 (135 KB)
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(1)
Title
:
ORNITHINE AMINOTRANSFERASE
Authors
:
B. W. Shen, T. Schirmer, J. N. Jansonius
Date
:
26 Mar 97 (Deposition) - 01 Apr 98 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.50
Chains
:
Asym. Unit : A,B,C
Biol. Unit 1: A,B (1x)
Biol. Unit 2: C (2x)
Keywords
:
Aminotransferase, Plp-Dependent Enzyme, Pyridoxal Phosphate
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
B. W. Shen, M. Hennig, E. Hohenester, J. N. Jansonius, T. Schirmer
Crystal Structure Of Human Recombinant Ornithine Aminotransferase.
J. Mol. Biol. V. 277 81 1998
(for further references see the
PDB file header
)
[
close entry info
]
Hetero Components
(1, 3)
Info
All Hetero Components
1a: PYRIDOXAL-5'-PHOSPHATE (PLPa)
1b: PYRIDOXAL-5'-PHOSPHATE (PLPb)
1c: PYRIDOXAL-5'-PHOSPHATE (PLPc)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
PLP
3
Ligand/Ion
PYRIDOXAL-5'-PHOSPHATE
[
close Hetero Component info
]
Sites
(3, 3)
Info
All Sites
1: PLA (SOFTWARE)
2: PLB (SOFTWARE)
3: PLC (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
1
PLA
SOFTWARE
PLP A:440
PLP (PYRIDOXAL-5'-PHOSPHATE) IS BOUND TO THE PROTEIN VIA A SCHIFF-BASE LINKAGE WITH THE LYSINE SIDE-CHAIN.
2
PLB
SOFTWARE
PLP B:440
PLP (PYRIDOXAL-5'-PHOSPHATE) IS BOUND TO THE PROTEIN VIA A SCHIFF-BASE LINKAGE WITH THE LYSINE SIDE-CHAIN.
3
PLC
SOFTWARE
PLP C:440
PLP (PYRIDOXAL-5'-PHOSPHATE) IS BOUND TO THE PROTEIN VIA A SCHIFF-BASE LINKAGE WITH THE LYSINE SIDE-CHAIN.
[
close Site info
]
SAPs(SNPs)/Variants
(28, 84)
Info
(mutated residues are not available)
All SNPs/Variants
01: VAR_071924 (G51D, chain A/B/C, )
02: VAR_000565 (N54K, chain A/B/C, )
03: VAR_000566 (Y55H, chain A/B/C, )
04: VAR_000567 (N89K, chain A/B/C, )
05: VAR_015648 (Q90E, chain A/B/C, )
06: VAR_000568 (C93F, chain A/B/C, )
07: VAR_071925 (Q104R, chain A/B/C, )
08: VAR_000569 (R154L, chain A/B/C, )
09: VAR_000570 (R180T, chain A/B/C, )
10: VAR_071926 (P199Q, chain A/B/C, )
11: VAR_000572 (A226V, chain A/B/C, )
12: VAR_000573 (P241L, chain A/B/C, )
13: VAR_000574 (Y245C, chain A/B/C, )
14: VAR_000575 (R250P, chain A/B/C, )
15: VAR_000576 (T267I, chain A/B/C, )
16: VAR_000577 (A270P, chain A/B/C, )
17: VAR_000578 (R271K, chain A/B/C, )
18: VAR_071927 (E318K, chain A/B/C, )
19: VAR_000579 (H319Y, chain A/B/C, )
20: VAR_000580 (V332M, chain A/B/C, )
21: VAR_000581 (G353D, chain A/B/C, )
22: VAR_000582 (G375A, chain A/B/C, )
23: VAR_000583 (C394R, chain A/B/C, )
24: VAR_071928 (C394Y, chain A/B/C, )
25: VAR_000584 (L402P, chain A/B/C, )
26: VAR_000585 (P417L, chain A/B/C, )
27: VAR_071929 (I436N, chain A/B/C, )
28: VAR_000586 (L437F, chain A/B/C, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
01
UniProt
VAR_071924
G
51
D
OAT_HUMAN
Disease (HOGA)
---
A/B/C
G
51
D
02
UniProt
VAR_000565
N
54
K
OAT_HUMAN
Disease (HOGA)
---
A/B/C
N
54
K
03
UniProt
VAR_000566
Y
55
H
OAT_HUMAN
Disease (HOGA)
---
A/B/C
Y
55
H
04
UniProt
VAR_000567
N
89
K
OAT_HUMAN
Disease (HOGA)
---
A/B/C
N
89
K
05
UniProt
VAR_015648
Q
90
E
OAT_HUMAN
Disease (HOGA)
---
A/B/C
Q
90
E
06
UniProt
VAR_000568
C
93
F
OAT_HUMAN
Disease (HOGA)
---
A/B/C
C
93
F
07
UniProt
VAR_071925
Q
104
R
OAT_HUMAN
Disease (HOGA)
---
A/B/C
Q
104
R
08
UniProt
VAR_000569
R
154
L
OAT_HUMAN
Disease (HOGA)
---
A/B/C
R
154
L
09
UniProt
VAR_000570
R
180
T
OAT_HUMAN
Disease (HOGA)
---
A/B/C
R
180
T
10
UniProt
VAR_071926
P
199
Q
OAT_HUMAN
Disease (HOGA)
---
A/B/C
P
199
Q
11
UniProt
VAR_000572
A
226
V
OAT_HUMAN
Disease (HOGA)
---
A/B/C
A
226
V
12
UniProt
VAR_000573
P
241
L
OAT_HUMAN
Disease (HOGA)
---
A/B/C
P
241
L
13
UniProt
VAR_000574
Y
245
C
OAT_HUMAN
Disease (HOGA)
---
A/B/C
Y
245
C
14
UniProt
VAR_000575
R
250
P
OAT_HUMAN
Disease (HOGA)
---
A/B/C
R
250
P
15
UniProt
VAR_000576
T
267
I
OAT_HUMAN
Disease (HOGA)
---
A/B/C
T
267
I
16
UniProt
VAR_000577
A
270
P
OAT_HUMAN
Disease (HOGA)
---
A/B/C
A
270
P
17
UniProt
VAR_000578
R
271
K
OAT_HUMAN
Disease (HOGA)
---
A/B/C
R
271
K
18
UniProt
VAR_071927
E
318
K
OAT_HUMAN
Disease (HOGA)
---
A/B/C
E
318
K
19
UniProt
VAR_000579
H
319
Y
OAT_HUMAN
Disease (HOGA)
---
A/B/C
H
319
Y
20
UniProt
VAR_000580
V
332
M
OAT_HUMAN
Disease (HOGA)
---
A/B/C
V
332
M
21
UniProt
VAR_000581
G
353
D
OAT_HUMAN
Disease (HOGA)
---
A/B/C
G
353
D
22
UniProt
VAR_000582
G
375
A
OAT_HUMAN
Disease (HOGA)
---
A/B/C
G
375
A
23
UniProt
VAR_000583
C
394
R
OAT_HUMAN
Disease (HOGA)
---
A/B/C
C
394
R
24
UniProt
VAR_071928
C
394
Y
OAT_HUMAN
Disease (HOGA)
---
A/B/C
C
394
Y
25
UniProt
VAR_000584
L
402
P
OAT_HUMAN
Disease (HOGA)
121965043
A/B/C
L
402
P
26
UniProt
VAR_000585
P
417
L
OAT_HUMAN
Disease (HOGA)
---
A/B/C
P
417
L
27
UniProt
VAR_071929
I
436
N
OAT_HUMAN
Disease (HOGA)
---
A/B/C
I
436
N
28
UniProt
VAR_000586
L
437
F
OAT_HUMAN
Disease (HOGA)
1800456
A/B/C
L
437
F
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
[
close SNP/Variant info
]
PROSITE Patterns/Profiles
(1, 3)
Info
All PROSITE Patterns/Profiles
1: AA_TRANSFER_CLASS_3 (A:260-297,B:260-297,C:260-297)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
AA_TRANSFER_CLASS_3
PS00600
Aminotransferases class-III pyridoxal-phosphate attachment site.
OAT_HUMAN
260-297
3
A:260-297
B:260-297
C:260-297
[
close PROSITE info
]
Exons
(9, 27)
Info
All Exons
Exon 1.5 (A:36-67 | B:36-67 | C:36-67)
Exon 1.6c (A:67-142 | B:67-142 | C:67-142)
Exon 1.7 (A:142-174 | B:142-174 | C:142-174)
Exon 1.9b (A:174-216 | B:174-216 | C:174-216)
Exon 1.10b (A:217-257 | B:217-257 | C:217-257)
Exon 1.11b (A:258-300 | B:258-300 | C:258-300)
Exon 1.12b (A:301-338 | B:301-338 | C:301-338)
Exon 1.13 (A:339-387 | B:339-387 | C:339-387)
Exon 1.14b (A:387-439 | B:387-439 | C:387-439)
View:
Select:
Label:
All Exon Boundaries
01: Boundary 1.1/1.5
02: Boundary 1.5/1.6c
03: Boundary 1.6c/1.7
04: Boundary 1.7/1.9b
05: Boundary 1.9b/1.10b
06: Boundary 1.10b/1.11b
07: Boundary 1.11b/1.12b
08: Boundary 1.12b/1.13
09: Boundary 1.13/1.14b
10: Boundary 1.14b/-
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1
ENST00000368845
1
ENSE00001747008
chr10:
126107505-126107442
64
OAT_HUMAN
-
0
0
-
-
1.5
ENST00000368845
5
ENSE00002161409
chr10:
126100769-126100542
228
OAT_HUMAN
1-67
67
3
A:36-67
B:36-67
C:36-67
32
32
32
1.6c
ENST00000368845
6c
ENSE00000867714
chr10:
126097534-126097310
225
OAT_HUMAN
67-142
76
3
A:67-142
B:67-142
C:67-142
76
76
76
1.7
ENST00000368845
7
ENSE00000867713
chr10:
126097206-126097111
96
OAT_HUMAN
142-174
33
3
A:142-174
B:142-174
C:142-174
33
33
33
1.9b
ENST00000368845
9b
ENSE00000867712
chr10:
126094132-126094005
128
OAT_HUMAN
174-216
43
3
A:174-216
B:174-216
C:174-216
43
43
43
1.10b
ENST00000368845
10b
ENSE00000903907
chr10:
126092489-126092367
123
OAT_HUMAN
217-257
41
3
A:217-257
B:217-257
C:217-257
41
41
41
1.11b
ENST00000368845
11b
ENSE00000903906
chr10:
126091624-126091496
129
OAT_HUMAN
258-300
43
3
A:258-300
B:258-300
C:258-300
43
43
43
1.12b
ENST00000368845
12b
ENSE00000903905
chr10:
126090408-126090295
114
OAT_HUMAN
301-338
38
3
A:301-338
B:301-338
C:301-338
38
38
38
1.13
ENST00000368845
13
ENSE00000903904
chr10:
126089553-126089409
145
OAT_HUMAN
339-387
49
3
A:339-387
B:339-387
C:339-387
49
49
49
1.14b
ENST00000368845
14b
ENSE00001548750
chr10:
126086671-126085876
796
OAT_HUMAN
387-439
53
3
A:387-439
B:387-439
C:387-439
53
53
53
[
close EXON info
]
SCOP Domains
(1, 3)
Info
All SCOP Domains
1a: SCOP_d1oata_ (A:)
1b: SCOP_d1oatb_ (B:)
1c: SCOP_d1oatc_ (C:)
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(
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(
)
(
)
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)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
PLP-dependent transferase-like
(627)
Superfamily
:
PLP-dependent transferases
(625)
Family
:
GABA-aminotransferase-like
(167)
Protein domain
:
Ornithine aminotransferase
(8)
Human (Homo sapiens) [TaxId: 9606]
(6)
1a
d1oata_
A:
1b
d1oatb_
B:
1c
d1oatc_
C:
[
close SCOP info
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CATH Domains
(2, 6)
Info
all CATH domains
1a: CATH_1oatA02 (A:94-343)
1b: CATH_1oatB02 (B:94-343)
1c: CATH_1oatC02 (C:94-343)
2a: CATH_1oatA01 (A:36-93,A:344-439)
2b: CATH_1oatB01 (B:36-93,B:344-439)
2c: CATH_1oatC01 (C:36-93,C:344-439)
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(
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)
Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
3-Layer(aba) Sandwich
(12045)
Topology
:
Aspartate Aminotransferase; domain 2
(384)
Homologous Superfamily
:
Type I PLP-dependent aspartate aminotransferase-like (Major domain)
(384)
Human (Homo sapiens)
(18)
1a
1oatA02
A:94-343
1b
1oatB02
B:94-343
1c
1oatC02
C:94-343
Architecture
:
Alpha-Beta Complex
(3881)
Topology
:
Aspartate Aminotransferase, domain 1
(355)
Homologous Superfamily
:
Aspartate Aminotransferase, domain 1
(354)
Human (Homo sapiens)
(15)
2a
1oatA01
A:36-93,A:344-439
2b
1oatB01
B:36-93,B:344-439
2c
1oatC01
C:36-93,C:344-439
[
close CATH info
]
Pfam Domains
(1, 3)
Info
all PFAM domains
1a: PFAM_Aminotran_3_1oatC01 (C:61-384)
1b: PFAM_Aminotran_3_1oatC02 (C:61-384)
1c: PFAM_Aminotran_3_1oatC03 (C:61-384)
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)
Clan
:
PLP_aminotran
(240)
Family
:
Aminotran_3
(44)
Homo sapiens (Human)
(2)
1a
Aminotran_3-1oatC01
C:61-384
1b
Aminotran_3-1oatC02
C:61-384
1c
Aminotran_3-1oatC03
C:61-384
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Asym.Unit (207 KB)
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