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1OAR
Biol. Unit 2
Info
Asym.Unit (154 KB)
Biol.Unit 1 (45 KB)
Biol.Unit 2 (36 KB)
Biol.Unit 3 (45 KB)
Biol.Unit 4 (36 KB)
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(1)
Title
:
FV IGE SPE-7 IN COMPLEX WITH ALIZARIN RED
Authors
:
L. C. James, P. Roversi, D. Tawfik
Date
:
21 Jan 03 (Deposition) - 15 Jan 04 (Release) - 30 Oct 13 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.22
Chains
:
Asym. Unit : H,I,J,K,L,M,N,O
Biol. Unit 1: H,L (1x)
Biol. Unit 2: I,M (1x)
Biol. Unit 3: J,N (1x)
Biol. Unit 4: K,O (1x)
Keywords
:
Immune System, Antibody-Complex, Antibody, Allergy, Ige, Conformational Diversity, Multispecificity
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
L. C. James, P. Roversi, D. Tawfik
Antibody Multispecificity Mediated By Conformational Diversity
Science V. 299 1362 2003
[
close entry info
]
Hetero Components
(1, 1)
Info
All Hetero Components
1a: ALIZARIN RED (AZNa)
1b: ALIZARIN RED (AZNb)
1c: ALIZARIN RED (AZNc)
1d: ALIZARIN RED (AZNd)
2a: CACODYLATE ION (CACa)
2b: CACODYLATE ION (CACb)
3a: CHLORIDE ION (CLa)
3b: CHLORIDE ION (CLb)
3c: CHLORIDE ION (CLc)
3d: CHLORIDE ION (CLd)
3e: CHLORIDE ION (CLe)
3f: CHLORIDE ION (CLf)
3g: CHLORIDE ION (CLg)
3h: CHLORIDE ION (CLh)
4a: DIMETHYL SULFOXIDE (DMSa)
4b: DIMETHYL SULFOXIDE (DMSb)
4c: DIMETHYL SULFOXIDE (DMSc)
4d: DIMETHYL SULFOXIDE (DMSd)
4e: DIMETHYL SULFOXIDE (DMSe)
4f: DIMETHYL SULFOXIDE (DMSf)
4g: DIMETHYL SULFOXIDE (DMSg)
4h: DIMETHYL SULFOXIDE (DMSh)
4i: DIMETHYL SULFOXIDE (DMSi)
4j: DIMETHYL SULFOXIDE (DMSj)
4k: DIMETHYL SULFOXIDE (DMSk)
4l: DIMETHYL SULFOXIDE (DMSl)
4m: DIMETHYL SULFOXIDE (DMSm)
4n: DIMETHYL SULFOXIDE (DMSn)
4o: DIMETHYL SULFOXIDE (DMSo)
4p: DIMETHYL SULFOXIDE (DMSp)
4q: DIMETHYL SULFOXIDE (DMSq)
4r: DIMETHYL SULFOXIDE (DMSr)
4s: DIMETHYL SULFOXIDE (DMSs)
4t: DIMETHYL SULFOXIDE (DMSt)
4u: DIMETHYL SULFOXIDE (DMSu)
4v: DIMETHYL SULFOXIDE (DMSv)
4w: DIMETHYL SULFOXIDE (DMSw)
4x: DIMETHYL SULFOXIDE (DMSx)
5a: 1,2-ETHANEDIOL (EDOa)
5b: 1,2-ETHANEDIOL (EDOb)
6a: SODIUM ION (NAa)
6b: SODIUM ION (NAb)
6c: SODIUM ION (NAc)
6d: SODIUM ION (NAd)
6e: SODIUM ION (NAe)
6f: SODIUM ION (NAf)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
AZN
1
Ligand/Ion
ALIZARIN RED
2
CAC
-1
Ligand/Ion
CACODYLATE ION
3
CL
-1
Ligand/Ion
CHLORIDE ION
4
DMS
-1
Ligand/Ion
DIMETHYL SULFOXIDE
5
EDO
-1
Ligand/Ion
1,2-ETHANEDIOL
6
NA
-1
Ligand/Ion
SODIUM ION
[
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Sites
(9, 9)
Info
All Sites
1: BC1 (SOFTWARE)
2: BC2 (SOFTWARE)
3: BC6 (SOFTWARE)
4: CC2 (SOFTWARE)
5: CC7 (SOFTWARE)
6: CC8 (SOFTWARE)
7: DC4 (SOFTWARE)
8: DC5 (SOFTWARE)
9: DC7 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
1
BC1
SOFTWARE
TYR J:102 , GLY J:103 , THR M:17 , VAL M:18 , THR M:19 , CL M:913 , HOH M:2007
BINDING SITE FOR RESIDUE NA M 903
2
BC2
SOFTWARE
NA M:903
BINDING SITE FOR RESIDUE CL M 913
3
BC6
SOFTWARE
NA I:903 , GLY N:102 , NA N:901
BINDING SITE FOR RESIDUE CL N 913
4
CC2
SOFTWARE
PRO H:41 , DMS H:302 , EDO H:401 , NA I:903
BINDING SITE FOR RESIDUE DMS H 304
5
CC7
SOFTWARE
TRP I:33 , HIS I:35 , ARG I:50 , LYS I:59 , MET I:99 , TYR I:105 , TYR M:34 , ASN M:36 , TRP M:93
BINDING SITE FOR RESIDUE AZN I 500
6
CC8
SOFTWARE
ARG J:50 , ASP J:52 , GLY J:57 , HOH J:2029 , HOH J:2064 , GLY M:70
BINDING SITE FOR RESIDUE DMS J 300
7
DC4
SOFTWARE
TYR J:102 , GLU M:7
BINDING SITE FOR RESIDUE DMS J 305
8
DC5
SOFTWARE
HOH J:2066 , GLU M:16 , DMS N:300 , DMS N:304
BINDING SITE FOR RESIDUE DMS J 306
9
DC7
SOFTWARE
TRP J:33 , HIS J:35 , ARG J:50 , LYS J:59 , MET J:99 , TYR J:105 , LEU M:68 , ILE M:69 , GLY M:70 , HOH M:2027 , TYR N:34 , ASN N:36 , TRP N:93
BINDING SITE FOR RESIDUE AZN J 500
[
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are only available for the asymmetric unit)
All SNPs/Variants
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PROSITE Patterns/Profiles
(, 0)
Info
All PROSITE Patterns/Profiles
;
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End label:
Sorry, no Info available
[
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Exons
(0, 0)
Info
All Exons
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All Exon Boundaries
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(2, 8)
Info
All SCOP Domains
1a: SCOP_d1oarh_ (H:)
1b: SCOP_d1oarj_ (J:)
1c: SCOP_d1oark_ (K:)
1d: SCOP_d1oari_ (I:)
2a: SCOP_d1oarl_ (L:)
2b: SCOP_d1oarm_ (M:)
2c: SCOP_d1oarn_ (N:)
2d: SCOP_d1oaro_ (O:)
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(
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)
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)
(
)
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)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All beta proteins
(24004)
Fold
:
Immunoglobulin-like beta-sandwich
(7299)
Superfamily
:
Immunoglobulin
(5995)
Family
:
V set domains (antibody variable domain-like)
(1919)
Protein domain
:
Immunoglobulin heavy chain variable domain, VH
(658)
Norway rat (Rattus norvegicus) [TaxId: 10116]
(16)
1a
d1oarh_
H:
1b
d1oarj_
J:
1c
d1oark_
K:
1d
d1oari_
I:
Protein domain
:
Immunoglobulin light chain lambda variable domain, VL-lambda
(89)
Norway rat (Rattus norvegicus) [TaxId: 10116]
(7)
2a
d1oarl_
L:
2b
d1oarm_
M:
2c
d1oarn_
N:
2d
d1oaro_
O:
[
close SCOP info
]
CATH Domains
(1, 8)
Info
all CATH domains
1a: CATH_1oarH00 (H:1-122)
1b: CATH_1oarO00 (O:3-109)
1c: CATH_1oarM00 (M:3-109)
1d: CATH_1oarL00 (L:2-109)
1e: CATH_1oarN00 (N:2-109)
1f: CATH_1oarJ00 (J:1-122)
1g: CATH_1oarI00 (I:14-116)
1h: CATH_1oarK00 (K:14-116)
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)
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(
)
(
)
Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Mainly Beta
(13760)
Architecture
:
Sandwich
(5577)
Topology
:
Immunoglobulin-like
(3897)
Homologous Superfamily
:
Immunoglobulins
(2282)
Black rat, roof rat (Rattus rattus)
(7)
1a
1oarH00
H:1-122
1b
1oarO00
O:3-109
1c
1oarM00
M:3-109
1d
1oarL00
L:2-109
1e
1oarN00
N:2-109
1f
1oarJ00
J:1-122
1g
1oarI00
I:14-116
1h
1oarK00
K:14-116
[
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]
Pfam Domains
(0, 0)
Info
all PFAM domains
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Atom Selection
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Protein
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All Atoms
Protein & NOT Variant
Protein & NOT Site
Protein & NOT PROSITE
Chain I
Chain M
Asymmetric Unit 1
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Asym.Unit (154 KB)
Header - Asym.Unit
Biol.Unit 1 (45 KB)
Header - Biol.Unit 1
Biol.Unit 2 (36 KB)
Header - Biol.Unit 2
Biol.Unit 3 (45 KB)
Header - Biol.Unit 3
Biol.Unit 4 (36 KB)
Header - Biol.Unit 4
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