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1OAR
Asym. Unit
Info
Asym.Unit (154 KB)
Biol.Unit 1 (45 KB)
Biol.Unit 2 (36 KB)
Biol.Unit 3 (45 KB)
Biol.Unit 4 (36 KB)
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Title
:
FV IGE SPE-7 IN COMPLEX WITH ALIZARIN RED
Authors
:
L. C. James, P. Roversi, D. Tawfik
Date
:
21 Jan 03 (Deposition) - 15 Jan 04 (Release) - 30 Oct 13 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.22
Chains
:
Asym. Unit : H,I,J,K,L,M,N,O
Biol. Unit 1: H,L (1x)
Biol. Unit 2: I,M (1x)
Biol. Unit 3: J,N (1x)
Biol. Unit 4: K,O (1x)
Keywords
:
Immune System, Antibody-Complex, Antibody, Allergy, Ige, Conformational Diversity, Multispecificity
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
L. C. James, P. Roversi, D. Tawfik
Antibody Multispecificity Mediated By Conformational Diversity
Science V. 299 1362 2003
[
close entry info
]
Hetero Components
(6, 46)
Info
All Hetero Components
1a: ALIZARIN RED (AZNa)
1b: ALIZARIN RED (AZNb)
1c: ALIZARIN RED (AZNc)
1d: ALIZARIN RED (AZNd)
2a: CACODYLATE ION (CACa)
2b: CACODYLATE ION (CACb)
3a: CHLORIDE ION (CLa)
3b: CHLORIDE ION (CLb)
3c: CHLORIDE ION (CLc)
3d: CHLORIDE ION (CLd)
3e: CHLORIDE ION (CLe)
3f: CHLORIDE ION (CLf)
3g: CHLORIDE ION (CLg)
3h: CHLORIDE ION (CLh)
4a: DIMETHYL SULFOXIDE (DMSa)
4b: DIMETHYL SULFOXIDE (DMSb)
4c: DIMETHYL SULFOXIDE (DMSc)
4d: DIMETHYL SULFOXIDE (DMSd)
4e: DIMETHYL SULFOXIDE (DMSe)
4f: DIMETHYL SULFOXIDE (DMSf)
4g: DIMETHYL SULFOXIDE (DMSg)
4h: DIMETHYL SULFOXIDE (DMSh)
4i: DIMETHYL SULFOXIDE (DMSi)
4j: DIMETHYL SULFOXIDE (DMSj)
4k: DIMETHYL SULFOXIDE (DMSk)
4l: DIMETHYL SULFOXIDE (DMSl)
4m: DIMETHYL SULFOXIDE (DMSm)
4n: DIMETHYL SULFOXIDE (DMSn)
4o: DIMETHYL SULFOXIDE (DMSo)
4p: DIMETHYL SULFOXIDE (DMSp)
4q: DIMETHYL SULFOXIDE (DMSq)
4r: DIMETHYL SULFOXIDE (DMSr)
4s: DIMETHYL SULFOXIDE (DMSs)
4t: DIMETHYL SULFOXIDE (DMSt)
4u: DIMETHYL SULFOXIDE (DMSu)
4v: DIMETHYL SULFOXIDE (DMSv)
4w: DIMETHYL SULFOXIDE (DMSw)
4x: DIMETHYL SULFOXIDE (DMSx)
5a: 1,2-ETHANEDIOL (EDOa)
5b: 1,2-ETHANEDIOL (EDOb)
6a: SODIUM ION (NAa)
6b: SODIUM ION (NAb)
6c: SODIUM ION (NAc)
6d: SODIUM ION (NAd)
6e: SODIUM ION (NAe)
6f: SODIUM ION (NAf)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
AZN
4
Ligand/Ion
ALIZARIN RED
2
CAC
2
Ligand/Ion
CACODYLATE ION
3
CL
8
Ligand/Ion
CHLORIDE ION
4
DMS
24
Ligand/Ion
DIMETHYL SULFOXIDE
5
EDO
2
Ligand/Ion
1,2-ETHANEDIOL
6
NA
6
Ligand/Ion
SODIUM ION
[
close Hetero Component info
]
Sites
(45, 45)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
18: BC9 (SOFTWARE)
19: CC1 (SOFTWARE)
20: CC2 (SOFTWARE)
21: CC3 (SOFTWARE)
22: CC4 (SOFTWARE)
23: CC5 (SOFTWARE)
24: CC6 (SOFTWARE)
25: CC7 (SOFTWARE)
26: CC8 (SOFTWARE)
27: CC9 (SOFTWARE)
28: DC1 (SOFTWARE)
29: DC2 (SOFTWARE)
30: DC3 (SOFTWARE)
31: DC4 (SOFTWARE)
32: DC5 (SOFTWARE)
33: DC6 (SOFTWARE)
34: DC7 (SOFTWARE)
35: DC8 (SOFTWARE)
36: DC9 (SOFTWARE)
37: EC1 (SOFTWARE)
38: EC2 (SOFTWARE)
39: EC3 (SOFTWARE)
40: EC4 (SOFTWARE)
41: EC5 (SOFTWARE)
42: EC6 (SOFTWARE)
43: EC7 (SOFTWARE)
44: EC8 (SOFTWARE)
45: EC9 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
THR H:115 , HOH H:2065 , HIS L:44
BINDING SITE FOR RESIDUE CAC H 201
02
AC2
SOFTWARE
GLN L:6 , GLY L:102 , GLY L:103 , HOH L:2062
BINDING SITE FOR RESIDUE NA H 903
03
AC3
SOFTWARE
DMS H:304 , CL N:913 , HOH N:2010 , HOH N:2012
BINDING SITE FOR RESIDUE NA I 903
04
AC4
SOFTWARE
THR J:115 , HOH J:2063 , HIS N:44
BINDING SITE FOR RESIDUE CAC J 201
05
AC5
SOFTWARE
GLN N:6 , GLY N:102 , GLY N:103 , HOH N:2064
BINDING SITE FOR RESIDUE NA J 903
06
AC6
SOFTWARE
HOH H:2026 , EDO J:401 , PHE L:89 , CL L:913 , HOH L:2035
BINDING SITE FOR RESIDUE NA L 901
07
AC7
SOFTWARE
TRP H:47 , LEU L:98 , PHE L:100
BINDING SITE FOR RESIDUE CL L 911
08
AC8
SOFTWARE
GLN H:82
BINDING SITE FOR RESIDUE CL L 912
09
AC9
SOFTWARE
GLY L:102 , NA L:901
BINDING SITE FOR RESIDUE CL L 913
10
BC1
SOFTWARE
TYR J:102 , GLY J:103 , THR M:17 , VAL M:18 , THR M:19 , CL M:913 , HOH M:2007
BINDING SITE FOR RESIDUE NA M 903
11
BC2
SOFTWARE
NA M:903
BINDING SITE FOR RESIDUE CL M 913
12
BC3
SOFTWARE
EDO H:401 , PHE N:89 , CL N:913 , HOH N:2034
BINDING SITE FOR RESIDUE NA N 901
13
BC4
SOFTWARE
TRP J:47 , LEU N:98 , PHE N:100
BINDING SITE FOR RESIDUE CL N 911
14
BC5
SOFTWARE
GLN J:82
BINDING SITE FOR RESIDUE CL J 912
15
BC6
SOFTWARE
NA I:903 , GLY N:102 , NA N:901
BINDING SITE FOR RESIDUE CL N 913
16
BC7
SOFTWARE
ARG H:50 , ASP H:52 , GLY H:57 , HOH H:2031 , HOH H:2066 , GLY O:70
BINDING SITE FOR RESIDUE DMS H 300
17
BC8
SOFTWARE
TYR H:60 , LYS H:65 , HOH H:2033 , HOH H:2038 , PRO L:61 , ARG L:63
BINDING SITE FOR RESIDUE DMS H 301
18
BC9
SOFTWARE
PRO H:41 , ALA H:92 , DMS H:304 , HOH H:2062
BINDING SITE FOR RESIDUE DMS H 302
19
CC1
SOFTWARE
SER H:17 , GLN H:82 , SER L:65
BINDING SITE FOR RESIDUE DMS H 303
20
CC2
SOFTWARE
PRO H:41 , DMS H:302 , EDO H:401 , NA I:903
BINDING SITE FOR RESIDUE DMS H 304
21
CC3
SOFTWARE
TYR H:102 , GLU O:7
BINDING SITE FOR RESIDUE DMS H 305
22
CC4
SOFTWARE
HOH H:2068 , DMS L:300 , DMS L:304 , GLU O:16
BINDING SITE FOR RESIDUE DMS H 306
23
CC5
SOFTWARE
DMS H:304 , ILE N:87 , NA N:901 , HOH N:2034
BINDING SITE FOR RESIDUE EDO H 401
24
CC6
SOFTWARE
TRP H:33 , HIS H:35 , ARG H:50 , LYS H:59 , MET H:99 , TYR H:105 , TYR L:34 , ASN L:36 , TRP L:93 , LEU O:68 , ILE O:69 , GLY O:70 , HOH O:2028
BINDING SITE FOR RESIDUE AZN H 500
25
CC7
SOFTWARE
TRP I:33 , HIS I:35 , ARG I:50 , LYS I:59 , MET I:99 , TYR I:105 , TYR M:34 , ASN M:36 , TRP M:93
BINDING SITE FOR RESIDUE AZN I 500
26
CC8
SOFTWARE
ARG J:50 , ASP J:52 , GLY J:57 , HOH J:2029 , HOH J:2064 , GLY M:70
BINDING SITE FOR RESIDUE DMS J 300
27
CC9
SOFTWARE
TYR J:60 , LYS J:65 , HOH J:2031 , HOH J:2035 , PRO N:61 , ARG N:63
BINDING SITE FOR RESIDUE DMS J 301
28
DC1
SOFTWARE
PRO J:41 , ALA J:92 , DMS J:304 , HOH J:2060
BINDING SITE FOR RESIDUE DMS J 302
29
DC2
SOFTWARE
SER J:17 , GLN J:82 , SER N:65
BINDING SITE FOR RESIDUE DMS J 303
30
DC3
SOFTWARE
PRO J:41 , DMS J:302 , EDO J:401
BINDING SITE FOR RESIDUE DMS J 304
31
DC4
SOFTWARE
TYR J:102 , GLU M:7
BINDING SITE FOR RESIDUE DMS J 305
32
DC5
SOFTWARE
HOH J:2066 , GLU M:16 , DMS N:300 , DMS N:304
BINDING SITE FOR RESIDUE DMS J 306
33
DC6
SOFTWARE
DMS J:304 , ILE L:87 , NA L:901 , HOH L:2035
BINDING SITE FOR RESIDUE EDO J 401
34
DC7
SOFTWARE
TRP J:33 , HIS J:35 , ARG J:50 , LYS J:59 , MET J:99 , TYR J:105 , LEU M:68 , ILE M:69 , GLY M:70 , HOH M:2027 , TYR N:34 , ASN N:36 , TRP N:93
BINDING SITE FOR RESIDUE AZN J 500
35
DC8
SOFTWARE
TRP K:33 , HIS K:35 , ARG K:50 , LYS K:59 , MET K:99 , TYR K:105 , TYR O:34 , ASN O:36 , TRP O:93
BINDING SITE FOR RESIDUE AZN K 500
36
DC9
SOFTWARE
SER H:85 , DMS H:306 , ASN L:54 , ASN L:55 , ARG L:56 , DMS L:304
BINDING SITE FOR RESIDUE DMS L 300
37
EC1
SOFTWARE
GLN L:39 , PRO L:61 , HOH L:2060 , HOH L:2067
BINDING SITE FOR RESIDUE DMS L 301
38
EC2
SOFTWARE
VAL L:4 , PHE L:100 , GLY L:102
BINDING SITE FOR RESIDUE DMS L 302
39
EC3
SOFTWARE
GLY L:52 , ASN L:54 , ASN L:55 , HOH L:2032
BINDING SITE FOR RESIDUE DMS L 303
40
EC4
SOFTWARE
SER H:66 , DMS H:306 , ARG L:56 , ALA L:57 , VAL L:60 , DMS L:300
BINDING SITE FOR RESIDUE DMS L 304
41
EC5
SOFTWARE
SER J:85 , DMS J:306 , ASN N:54 , ASN N:55 , ARG N:56 , DMS N:304
BINDING SITE FOR RESIDUE DMS N 300
42
EC6
SOFTWARE
LYS J:65 , GLN N:39 , PRO N:61 , HOH N:2061 , HOH N:2069
BINDING SITE FOR RESIDUE DMS N 301
43
EC7
SOFTWARE
VAL N:4 , PHE N:100 , GLY N:102
BINDING SITE FOR RESIDUE DMS N 302
44
EC8
SOFTWARE
GLY N:52 , ASN N:54 , ASN N:55 , HOH N:2044
BINDING SITE FOR RESIDUE DMS N 303
45
EC9
SOFTWARE
SER J:66 , DMS J:306 , ARG N:56 , ALA N:57 , PRO N:58 , VAL N:60 , DMS N:300
BINDING SITE FOR RESIDUE DMS N 304
[
close Site info
]
SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
View:
Select:
Label:
Sorry, no Info available
[
close SNP/Variant info
]
PROSITE Patterns/Profiles
(0, 0)
Info
All PROSITE Patterns/Profiles
;
View:
Select:
Label:
End label:
Sorry, no Info available
[
close PROSITE info
]
Exons
(0, 0)
Info
All Exons
View:
Select:
Label:
All Exon Boundaries
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(2, 8)
Info
All SCOP Domains
1a: SCOP_d1oarh_ (H:)
1b: SCOP_d1oarj_ (J:)
1c: SCOP_d1oark_ (K:)
1d: SCOP_d1oari_ (I:)
2a: SCOP_d1oarl_ (L:)
2b: SCOP_d1oarm_ (M:)
2c: SCOP_d1oarn_ (N:)
2d: SCOP_d1oaro_ (O:)
View:
Select:
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Classes
(
)
(
)
Folds
(
)
(
)
Superfamilies
(
)
(
)
Families
(
)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All beta proteins
(24004)
Fold
:
Immunoglobulin-like beta-sandwich
(7299)
Superfamily
:
Immunoglobulin
(5995)
Family
:
V set domains (antibody variable domain-like)
(1919)
Protein domain
:
Immunoglobulin heavy chain variable domain, VH
(658)
Norway rat (Rattus norvegicus) [TaxId: 10116]
(16)
1a
d1oarh_
H:
1b
d1oarj_
J:
1c
d1oark_
K:
1d
d1oari_
I:
Protein domain
:
Immunoglobulin light chain lambda variable domain, VL-lambda
(89)
Norway rat (Rattus norvegicus) [TaxId: 10116]
(7)
2a
d1oarl_
L:
2b
d1oarm_
M:
2c
d1oarn_
N:
2d
d1oaro_
O:
[
close SCOP info
]
CATH Domains
(1, 8)
Info
all CATH domains
1a: CATH_1oarH00 (H:1-122)
1b: CATH_1oarO00 (O:3-109)
1c: CATH_1oarM00 (M:3-109)
1d: CATH_1oarL00 (L:2-109)
1e: CATH_1oarN00 (N:2-109)
1f: CATH_1oarJ00 (J:1-122)
1g: CATH_1oarI00 (I:14-116)
1h: CATH_1oarK00 (K:14-116)
View:
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Classes
(
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(
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Architectures
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(
)
Topologies
(
)
(
)
Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Mainly Beta
(13760)
Architecture
:
Sandwich
(5577)
Topology
:
Immunoglobulin-like
(3897)
Homologous Superfamily
:
Immunoglobulins
(2282)
Black rat, roof rat (Rattus rattus)
(7)
1a
1oarH00
H:1-122
1b
1oarO00
O:3-109
1c
1oarM00
M:3-109
1d
1oarL00
L:2-109
1e
1oarN00
N:2-109
1f
1oarJ00
J:1-122
1g
1oarI00
I:14-116
1h
1oarK00
K:14-116
[
close CATH info
]
Pfam Domains
(0, 0)
Info
all PFAM domains
View:
Select:
Label:
Sorry, no Info available
[
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Atom Selection
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Chain K
Chain L
Chain M
Chain N
Chain O
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Asym.Unit (154 KB)
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