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1OAE
Asym. Unit
Info
Asym.Unit (55 KB)
Biol.Unit 1 (26 KB)
Biol.Unit 2 (26 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF THE REDUCED FORM OF CYTOCHROME C" FROM METHYLOPHILUS METHYLOTROPHUS
Authors
:
F. J. Enguita, R. Grenha, H. Santos, M. A. Carrondo
Date
:
09 Jan 03 (Deposition) - 26 Mar 04 (Release) - 22 Oct 14 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.95
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Keywords
:
Oxidoreductase(Cytochrome), Cytochrome C, Oxidoreductase, Electron Transport
(Keyword Search:
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Reference
:
F. J. Enguita, E. Pohl, D. L. Turner, H. Santos, M. A. Carrondo
Structural Evidence For A Proton Transfer Pathway Coupled With Haem Reduction Of Cytochrome C" From Methylophilus Methylotrophus.
J. Biol. Inorg. Chem. V. 11 189 2006
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Hetero Components
(3, 13)
Info
All Hetero Components
1a: GLYCEROL (GOLa)
1b: GLYCEROL (GOLb)
1c: GLYCEROL (GOLc)
1d: GLYCEROL (GOLd)
1e: GLYCEROL (GOLe)
2a: HEME C (HECa)
2b: HEME C (HECb)
3a: SULFATE ION (SO4a)
3b: SULFATE ION (SO4b)
3c: SULFATE ION (SO4c)
3d: SULFATE ION (SO4d)
3e: SULFATE ION (SO4e)
3f: SULFATE ION (SO4f)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
GOL
5
Ligand/Ion
GLYCEROL
2
HEC
2
Ligand/Ion
HEME C
3
SO4
6
Ligand/Ion
SULFATE ION
[
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Sites
(13, 13)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
View:
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Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
LYS A:7 , HOH A:2118 , HOH A:2120 , HOH A:2121 , ALA B:102 , ASP B:103
BINDING SITE FOR RESIDUE SO4 A1129
02
AC2
SOFTWARE
LYS A:80 , ARG A:81 , PHE A:82 , VAL A:88 , GLU A:91 , HEC A:1125 , HOH A:2122 , HOH A:2123 , HOH A:2124
BINDING SITE FOR RESIDUE SO4 A1130
03
AC3
SOFTWARE
ASN A:59 , VAL A:60 , HOH A:2125 , HOH A:2126 , HOH A:2127
BINDING SITE FOR RESIDUE SO4 A1131
04
AC4
SOFTWARE
ASN A:97 , ALA A:102 , ASP A:103 , LYS B:7 , LYS B:45 , HOH B:2096 , HOH B:2137 , HOH B:2138 , HOH B:2139
BINDING SITE FOR RESIDUE SO4 B1128
05
AC5
SOFTWARE
ARG B:81 , PHE B:82 , LYS B:87 , VAL B:88 , GLU B:91 , HEC B:1125 , HOH B:2140
BINDING SITE FOR RESIDUE SO4 B1129
06
AC6
SOFTWARE
SER B:27 , ILE B:28 , THR B:29 , HOH B:2142 , HOH B:2143
BINDING SITE FOR RESIDUE SO4 B1130
07
AC7
SOFTWARE
ALA A:48 , CYS A:49 , CYS A:52 , HIS A:53 , ASN A:63 , ILE A:70 , PRO A:71 , LEU A:73 , ARG A:81 , GLU A:91 , PHE A:92 , HIS A:95 , ILE A:99 , SO4 A:1130 , HOH A:2112 , HOH A:2113
BINDING SITE FOR RESIDUE HEC A1125
08
AC8
SOFTWARE
PHE B:34 , CYS B:49 , CYS B:52 , HIS B:53 , ASN B:63 , ILE B:70 , PRO B:71 , LEU B:73 , ARG B:81 , GLU B:91 , PHE B:92 , HIS B:95 , ILE B:99 , SO4 B:1129 , HOH B:2132 , HOH B:2133 , HOH B:2134
BINDING SITE FOR RESIDUE HEC B1125
09
AC9
SOFTWARE
PRO A:26 , SER A:27 , ILE A:28 , THR A:29 , HOH A:2114 , HOH A:2115 , PRO B:21
BINDING SITE FOR RESIDUE GOL A1126
10
BC1
SOFTWARE
ARG A:37 , GLU A:108 , HOH A:2101 , HOH A:2117 , PRO B:42
BINDING SITE FOR RESIDUE GOL A1127
11
BC2
SOFTWARE
ILE A:33 , ARG A:37 , HOH A:2044 , HOH A:2050
BINDING SITE FOR RESIDUE GOL A1128
12
BC3
SOFTWARE
ASN A:97 , HOH A:2090 , ILE B:64 , VAL B:65 , ILE B:99 , HOH B:2108 , HOH B:2135
BINDING SITE FOR RESIDUE GOL B1126
13
BC4
SOFTWARE
VAL A:65 , ILE A:99 , ASN B:97 , ASP B:98 , GLY B:101 , HOH B:2104 , HOH B:2112 , HOH B:2136
BINDING SITE FOR RESIDUE GOL B1127
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
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PROSITE Patterns/Profiles
(1, 2)
Info
All PROSITE Patterns/Profiles
1: CYTC (A:26-120,B:26-120)
;
View:
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Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
CYTC
PS51007
Cytochrome c family profile.
CYCA_METME
46-140
2
A:26-120
B:26-120
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Exons
(0, 0)
Info
All Exons
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All Exon Boundaries
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(1, 2)
Info
All SCOP Domains
1a: SCOP_d1oaea_ (A:)
1b: SCOP_d1oaeb_ (B:)
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Protein Domains
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Organisms
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(
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Class
:
All alpha proteins
(14657)
Fold
:
Cytochrome c
(308)
Superfamily
:
Cytochrome c
(308)
Family
:
monodomain cytochrome c
(197)
Protein domain
:
Cytochrome c''
(3)
Methylophilus methylotrophus, strain w3a1 [TaxId: 17]
(3)
1a
d1oaea_
A:
1b
d1oaeb_
B:
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CATH Domains
(1, 2)
Info
all CATH domains
1a: CATH_1oaeA00 (A:1-124)
1b: CATH_1oaeB00 (B:1-124)
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Organisms
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Class
:
Mainly Alpha
(13335)
Architecture
:
Orthogonal Bundle
(10391)
Topology
:
Cytochrome Bc1 Complex; Chain D, domain 2
(279)
Homologous Superfamily
:
Cytochrome c
(279)
Methylophilus methylotrophus. Organism_taxid: 17
(1)
1a
1oaeA00
A:1-124
1b
1oaeB00
B:1-124
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Pfam Domains
(1, 2)
Info
all PFAM domains
1a: PFAM_DUF1924_1oaeB01 (B:18-116)
1b: PFAM_DUF1924_1oaeB02 (B:18-116)
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Clan
:
Cytochrome-c
(108)
Family
:
DUF1924
(1)
Methylophilus methylotrophus (Bacterium W3A1)
(1)
1a
DUF1924-1oaeB01
B:18-116
1b
DUF1924-1oaeB02
B:18-116
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select chains 'A' and 'C'
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select all 'ALA' residues (Alanines) in chain 'A'
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select residue range 5 to 10 in all chains
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select residue range 5 to 10 in chain 'A'
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select non-helix/non-sheet protein parts
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Asym.Unit (55 KB)
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