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1O7Z
Asym. Unit
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Asym.Unit (24 KB)
Biol.Unit 1 (20 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF IP-10 T-FORM
Authors
:
G. J. Swaminathan, D. E. Holloway, A. C. Papageorgiou, K. R. Acharya
Date
:
20 Nov 02 (Deposition) - 08 May 03 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.92
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A,B (1x)
Keywords
:
Chemokine, Interferon Induction, Chemotaxis, Inflammatory Response
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
G. J. Swaminathan, D. E. Holloway, R. A. Colvin, G. K. Campanella, A. C. Papageorgiou, A. D. Luster, K. R. Acharya
Crystal Structures Of Oligomeric Forms Of The Ip-10/Cxcl10 Chemokine
Structure V. 11 521 2003
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Hetero Components
(0, 0)
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Sites
(0, 0)
Info
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SAPs(SNPs)/Variants
(0, 0)
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(mutated residues are not available)
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PROSITE Patterns/Profiles
(1, 2)
Info
All PROSITE Patterns/Profiles
1: SMALL_CYTOKINES_CXC (A:9-55,B:9-55)
;
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
SMALL_CYTOKINES_CXC
PS00471
Small cytokines (intercrine/chemokine) C-x-C subfamily signature.
CXL10_HUMAN
30-76
2
A:9-55
B:9-55
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Exons
(2, 4)
Info
All Exons
Exon 1.2 (A:9-42 | B:9-42)
Exon 1.3 (A:42-69 | B:42-64)
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All Exon Boundaries
1: Boundary 1.1/1.2
2: Boundary 1.2/1.3
3: Boundary 1.3/1.4
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1
ENST00000306602
1
ENSE00001126423
chr4:
76944650-76944524
127
CXL10_HUMAN
1-21
21
0
-
-
1.2
ENST00000306602
2
ENSE00001139451
chr4:
76943970-76943844
127
CXL10_HUMAN
21-63
43
2
A:9-42
B:9-42
34
34
1.3
ENST00000306602
3
ENSE00001139442
chr4:
76943608-76943519
90
CXL10_HUMAN
63-93
31
2
A:42-69
B:42-64
28
23
1.4
ENST00000306602
4
ENSE00001193218
chr4:
76943101-76942273
829
CXL10_HUMAN
93-98
6
0
-
-
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SCOP Domains
(1, 2)
Info
All SCOP Domains
1a: SCOP_d1o7za_ (A:)
1b: SCOP_d1o7zb_ (B:)
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Protein Domains
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Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
IL8-like
(118)
Superfamily
:
Interleukin 8-like chemokines
(117)
Family
:
Interleukin 8-like chemokines
(113)
Protein domain
:
IP-10/CXCL10
(4)
Human (Homo sapiens) [TaxId: 9606]
(4)
1a
d1o7za_
A:
1b
d1o7zb_
B:
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CATH Domains
(1, 2)
Info
all CATH domains
1a: CATH_1o7zA00 (A:9-69)
1b: CATH_1o7zB00 (B:9-64)
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Organisms
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)
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Class
:
Mainly Beta
(13760)
Architecture
:
Beta Barrel
(4804)
Topology
:
OB fold (Dihydrolipoamide Acetyltransferase, E2P)
(1040)
Homologous Superfamily
:
[code=2.40.50.40, no name defined]
(161)
[unclassified]
(41)
1a
1o7zA00
A:9-69
1b
1o7zB00
B:9-64
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Pfam Domains
(1, 2)
Info
all PFAM domains
1a: PFAM_IL8_1o7zB01 (B:9-64)
1b: PFAM_IL8_1o7zB02 (B:9-64)
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Clans
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Clan
:
no clan defined [family: IL8]
(55)
Family
:
IL8
(55)
Homo sapiens (Human)
(49)
1a
IL8-1o7zB01
B:9-64
1b
IL8-1o7zB02
B:9-64
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Asym.Unit (24 KB)
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