PLEASE WAIT...
Getting 'Biological Unit' information from database.
PLEASE WAIT...
Getting 'Hetero Component' information from database.
PLEASE WAIT...
Getting 'Site' information from database.
PLEASE WAIT...
Getting 'PROSITE' information from database.
PLEASE WAIT...
Getting 'Exon' information from database.
1O7A
Asym. Unit
Info
Asym.Unit (539 KB)
Biol.Unit 1 (182 KB)
Biol.Unit 2 (180 KB)
Biol.Unit 3 (97 KB)
Biol.Unit 4 (182 KB)
(using Jmol or JSmol)
spin
show selected part
auto zoom/center
Standard Views
(
Basic
|
Advanced
Interface
)
(
Basic
|
Advanced
Interface
)
Help
(1)
Title
:
HUMAN BETA-HEXOSAMINIDASE B
Authors
:
T. Maier, N. Strater, C. Schuette, R. Klingenstein, K. Sandhoff, W. Saenger
Date
:
29 Oct 02 (Deposition) - 23 Oct 03 (Release) - 25 Apr 12 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.25
Chains
:
Asym. Unit : A,B,C,D,E,F
Biol. Unit 1: A,B (1x)
Biol. Unit 2: C,D (1x)
Biol. Unit 3: E (1x)
Biol. Unit 4: F (2x)
Keywords
:
Hydrolase, Glycosyl Hydrolase, Hexosaminidase, Lysosomal, Sphingolipid Degradation, Sandhoff Disease, Ba8-Barrel, Glycosidase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
T. Maier, N. Strater, C. Schuette, R. Klingenstein, K. Sandhoff, W. Saenger
The X-Ray Crystal Structure Of Human Beta-Hexosaminidase B Provides New Insights Into Sandhoff Disease
J. Mol. Biol. V. 328 669 2003
(for further references see the
PDB file header
)
[
close entry info
]
Hetero Components
(3, 39)
Info
All Hetero Components
1a: 1,2-ETHANEDIOL (EDOa)
1b: 1,2-ETHANEDIOL (EDOb)
1c: 1,2-ETHANEDIOL (EDOc)
1d: 1,2-ETHANEDIOL (EDOd)
1e: 1,2-ETHANEDIOL (EDOe)
1f: 1,2-ETHANEDIOL (EDOf)
1g: 1,2-ETHANEDIOL (EDOg)
1h: 1,2-ETHANEDIOL (EDOh)
1i: 1,2-ETHANEDIOL (EDOi)
1j: 1,2-ETHANEDIOL (EDOj)
1k: 1,2-ETHANEDIOL (EDOk)
1l: 1,2-ETHANEDIOL (EDOl)
1m: 1,2-ETHANEDIOL (EDOm)
1n: 1,2-ETHANEDIOL (EDOn)
1o: 1,2-ETHANEDIOL (EDOo)
2a: 2-ACETAMIDO-2-DEOXY-D-GLUCONO-1,5-... (GDLa)
2b: 2-ACETAMIDO-2-DEOXY-D-GLUCONO-1,5-... (GDLb)
2c: 2-ACETAMIDO-2-DEOXY-D-GLUCONO-1,5-... (GDLc)
2d: 2-ACETAMIDO-2-DEOXY-D-GLUCONO-1,5-... (GDLd)
2e: 2-ACETAMIDO-2-DEOXY-D-GLUCONO-1,5-... (GDLe)
2f: 2-ACETAMIDO-2-DEOXY-D-GLUCONO-1,5-... (GDLf)
3a: N-ACETYL-D-GLUCOSAMINE (NAGa)
3b: N-ACETYL-D-GLUCOSAMINE (NAGb)
3c: N-ACETYL-D-GLUCOSAMINE (NAGc)
3d: N-ACETYL-D-GLUCOSAMINE (NAGd)
3e: N-ACETYL-D-GLUCOSAMINE (NAGe)
3f: N-ACETYL-D-GLUCOSAMINE (NAGf)
3g: N-ACETYL-D-GLUCOSAMINE (NAGg)
3h: N-ACETYL-D-GLUCOSAMINE (NAGh)
3i: N-ACETYL-D-GLUCOSAMINE (NAGi)
3j: N-ACETYL-D-GLUCOSAMINE (NAGj)
3k: N-ACETYL-D-GLUCOSAMINE (NAGk)
3l: N-ACETYL-D-GLUCOSAMINE (NAGl)
3m: N-ACETYL-D-GLUCOSAMINE (NAGm)
3n: N-ACETYL-D-GLUCOSAMINE (NAGn)
3o: N-ACETYL-D-GLUCOSAMINE (NAGo)
3p: N-ACETYL-D-GLUCOSAMINE (NAGp)
3q: N-ACETYL-D-GLUCOSAMINE (NAGq)
3r: N-ACETYL-D-GLUCOSAMINE (NAGr)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
EDO
15
Ligand/Ion
1,2-ETHANEDIOL
2
GDL
6
Ligand/Ion
2-ACETAMIDO-2-DEOXY-D-GLUCONO-1,5-LACTONE
3
NAG
18
Ligand/Ion
N-ACETYL-D-GLUCOSAMINE
[
close Hetero Component info
]
Sites
(33, 33)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
18: BC9 (SOFTWARE)
19: CC1 (SOFTWARE)
20: CC2 (SOFTWARE)
21: CC3 (SOFTWARE)
22: CC4 (SOFTWARE)
23: CC5 (SOFTWARE)
24: CC6 (SOFTWARE)
25: CC7 (SOFTWARE)
26: CC8 (SOFTWARE)
27: CC9 (SOFTWARE)
28: DC1 (SOFTWARE)
29: DC2 (SOFTWARE)
30: DC3 (SOFTWARE)
31: DC4 (SOFTWARE)
32: DC5 (SOFTWARE)
33: DC6 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
ARG A:211 , HIS A:294 , ASP A:354 , GLU A:355 , TRP A:405 , TRP A:424 , TYR A:450 , ASP A:452 , TRP A:489 , GLU A:491 , HOH A:2380 , HOH A:2381 , HOH A:2382
BINDING SITE FOR RESIDUE GDL A 600
02
AC2
SOFTWARE
TRP A:424 , ASP A:426 , ALA A:447 , LEU A:453 , HOH A:2303 , HOH A:2385
BINDING SITE FOR RESIDUE EDO A 800
03
AC3
SOFTWARE
TYR A:78 , ILE A:79 , PHE A:98 , HIS A:102
BINDING SITE FOR RESIDUE EDO A 801
04
AC4
SOFTWARE
GLY A:457 , GLN A:458 , ASP A:459 , TRP A:460 , ARG A:505 , PRO A:545 , LEU A:546
BINDING SITE FOR RESIDUE EDO A 802
05
AC5
SOFTWARE
ARG B:211 , HIS B:294 , ASP B:354 , GLU B:355 , TRP B:424 , TYR B:450 , ASP B:452 , TRP B:489 , GLU B:491 , HOH B:2391 , HOH B:2392 , HOH B:2399
BINDING SITE FOR RESIDUE GDL B 600
06
AC6
SOFTWARE
TRP B:424 , LYS B:425 , ASP B:426 , TYR B:450 , HOH B:2399 , ARG E:372
BINDING SITE FOR RESIDUE EDO B 800
07
AC7
SOFTWARE
PHE B:77 , TYR B:78 , ILE B:79 , PHE B:98 , HIS B:102 , LEU D:262
BINDING SITE FOR RESIDUE EDO B 801
08
AC8
SOFTWARE
GLY B:457 , GLN B:458 , ASP B:459 , TRP B:460 , ARG B:505 , LEU B:546
BINDING SITE FOR RESIDUE EDO B 802
09
AC9
SOFTWARE
ARG C:211 , HIS C:294 , ASP C:354 , GLU C:355 , TRP C:405 , TRP C:424 , TYR C:450 , ASP C:452 , TRP C:489 , GLU C:491 , HOH C:2383 , HOH C:2384 , HOH C:2385
BINDING SITE FOR RESIDUE GDL C 600
10
BC1
SOFTWARE
TRP D:424 , LYS D:425 , ASP D:426 , ALA D:447
BINDING SITE FOR RESIDUE EDO C 800
11
BC2
SOFTWARE
LEU B:262 , TYR D:78 , ILE D:79 , PHE D:98 , ARG D:99 , HIS D:102
BINDING SITE FOR RESIDUE EDO C 801
12
BC3
SOFTWARE
GLY D:457 , GLN D:458 , ASP D:459 , TRP D:460 , ARG D:505 , PRO D:545 , LEU D:546
BINDING SITE FOR RESIDUE EDO C 802
13
BC4
SOFTWARE
ARG D:211 , HIS D:294 , ASP D:354 , GLU D:355 , TRP D:405 , TRP D:424 , TYR D:450 , ASP D:452 , TRP D:489 , GLU D:491 , HOH D:2229 , HOH D:2343 , HOH D:2344
BINDING SITE FOR RESIDUE GDL D 600
14
BC5
SOFTWARE
ARG E:211 , HIS E:294 , ASP E:354 , GLU E:355 , TRP E:405 , TRP E:424 , TYR E:450 , ASP E:452 , TRP E:489 , GLU E:491 , HOH E:2442 , HOH E:2443 , HOH E:2444 , HOH E:2445
BINDING SITE FOR RESIDUE GDL E 600
15
BC6
SOFTWARE
TRP E:424 , LYS E:425 , ASP E:426 , ALA E:447 , TYR E:450 , LEU E:453
BINDING SITE FOR RESIDUE EDO E 800
16
BC7
SOFTWARE
PHE E:77 , TYR E:78 , ILE E:79 , PHE E:98 , HIS E:102
BINDING SITE FOR RESIDUE EDO E 801
17
BC8
SOFTWARE
GLY E:457 , GLN E:458 , ASP E:459 , TRP E:460 , ARG E:505 , PRO E:545 , LEU E:546
BINDING SITE FOR RESIDUE EDO E 802
18
BC9
SOFTWARE
ARG F:211 , HIS F:294 , ASP F:354 , GLU F:355 , TRP F:405 , TRP F:424 , TYR F:450 , ASP F:452 , TRP F:489 , GLU F:491 , HOH F:2357 , HOH F:2358 , HOH F:2359
BINDING SITE FOR RESIDUE GDL F 600
19
CC1
SOFTWARE
TRP F:424 , ASP F:426 , ALA F:447
BINDING SITE FOR RESIDUE EDO F 800
20
CC2
SOFTWARE
LEU E:262 , TYR F:78 , ILE F:79 , HIS F:102
BINDING SITE FOR RESIDUE EDO F 801
21
CC3
SOFTWARE
GLY F:457 , GLN F:458 , ASP F:459 , TRP F:460 , ARG F:505 , LEU F:546
BINDING SITE FOR RESIDUE EDO F 802
22
CC4
SOFTWARE
PRO A:83 , ASN A:84 , HOH A:2384
BINDING SITE FOR MONO-SACCHARIDE NAG A 702 BOUND TO ASN A 84
23
CC5
SOFTWARE
MET A:65 , PRO A:67 , LEU A:69 , ASN A:190
BINDING SITE FOR CHAIN A OF SUGAR BOUND TO ASN A 190 RESIDUES 700 TO 701
24
CC6
SOFTWARE
PRO B:83 , ASN B:84 , LEU B:128 , HOH B:2396 , HOH B:2397
BINDING SITE FOR MONO-SACCHARIDE NAG B 702 BOUND TO ASN B 84
25
CC7
SOFTWARE
MET B:65 , PRO B:67 , LEU B:69 , ASN B:190 , HOH B:2393 , HOH B:2395
BINDING SITE FOR CHAIN B OF SUGAR BOUND TO ASN B 190 RESIDUES 700 TO 701
26
CC8
SOFTWARE
MET C:65 , PRO C:67 , LEU C:69 , ASN C:190
BINDING SITE FOR CHAIN C OF SUGAR BOUND TO ASN C 190 RESIDUES 700 TO 701
27
CC9
SOFTWARE
ASN C:327
BINDING SITE FOR MONO-SACCHARIDE NAG C 703 BOUND TO ASN C 327
28
DC1
SOFTWARE
MET D:65 , PRO D:67 , LEU D:69 , ASN D:190 , HOH D:2345
BINDING SITE FOR CHAIN D OF SUGAR BOUND TO ASN D 190 RESIDUES 700 TO 701
29
DC2
SOFTWARE
PRO E:83 , ASN E:84
BINDING SITE FOR MONO-SACCHARIDE NAG E 702 BOUND TO ASN E 84
30
DC3
SOFTWARE
MET E:65 , THR E:66 , PRO E:67 , LEU E:69 , ASN E:190 , HOH E:2446
BINDING SITE FOR CHAIN E OF SUGAR BOUND TO ASN E 190 RESIDUES 700 TO 701
31
DC4
SOFTWARE
SER F:82 , ASN F:84 , VAL F:159 , LYS F:161 , HOH F:2063 , HOH F:2361
BINDING SITE FOR MONO-SACCHARIDE NAG F 702 BOUND TO ASN F 84
32
DC5
SOFTWARE
MET F:65 , PRO F:67 , LEU F:69 , ASN F:190 , HOH F:2360
BINDING SITE FOR CHAIN F OF SUGAR BOUND TO ASN F 190 RESIDUES 700 TO 701
33
DC6
SOFTWARE
ASN F:327
BINDING SITE FOR MONO-SACCHARIDE NAG F 703 BOUND TO ASN F 327
[
close Site info
]
SAPs(SNPs)/Variants
(10, 60)
Info
(mutated residues are not available)
All SNPs/Variants
01: VAR_003247 (S62L, chain A/B/C/D/E/F, )
02: VAR_003249 (I207V, chain A/B/C/D/E/F, )
03: VAR_011704 (S255R, chain A/B/C/D/E/F, )
04: VAR_003250 (C309Y, chain A/B/C/D/E/F, )
05: VAR_003251 (P417L, chain A/B/C/D/E/F, )
06: VAR_003252 (Y456S, chain A/B/C/D/E/F, )
07: VAR_011705 (P504S, chain A/B/C/D/E/F, )
08: VAR_003253 (R505Q, chain A/B/C/D/E/F, )
09: VAR_003254 (C534Y, chain A/B/C/D/E/F, )
10: VAR_011706 (A543T, chain A/B/C/D/E/F, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
01
UniProt
VAR_003247
S
62
L
HEXB_HUMAN
Disease (GM2G2)
820878
A/B/C/D/E/F
S
62
L
02
UniProt
VAR_003249
I
207
V
HEXB_HUMAN
Polymorphism
10805890
A/B/C/D/E/F
I
207
V
03
UniProt
VAR_011704
S
255
R
HEXB_HUMAN
Disease (GM2G2)
---
A/B/C/D/E/F
S
255
R
04
UniProt
VAR_003250
C
309
Y
HEXB_HUMAN
Disease (GM2G2)
---
A/B/C/D/E/F
C
309
Y
05
UniProt
VAR_003251
P
417
L
HEXB_HUMAN
Disease (GM2G2)
28942073
A/B/C/D/E/F
P
417
L
06
UniProt
VAR_003252
Y
456
S
HEXB_HUMAN
Disease (GM2G2)
---
A/B/C/D/E/F
Y
456
S
07
UniProt
VAR_011705
P
504
S
HEXB_HUMAN
Disease (GM2G2)
---
A/B/C/D/E/F
P
504
S
08
UniProt
VAR_003253
R
505
Q
HEXB_HUMAN
Disease (GM2G2)
---
A/B/C/D/E/F
R
505
Q
09
UniProt
VAR_003254
C
534
Y
HEXB_HUMAN
Disease (GM2G2)
---
A/B/C/D/E/F
C
534
Y
10
UniProt
VAR_011706
A
543
T
HEXB_HUMAN
Disease (GM2G2)
---
A/B/C/D/E/F
A
543
T
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
[
close SNP/Variant info
]
PROSITE Patterns/Profiles
(0, 0)
Info
All PROSITE Patterns/Profiles
;
View:
Select:
Label:
End label:
Sorry, no Info available
[
close PROSITE info
]
Exons
(14, 84)
Info
All Exons
Exon 1.2a (A:54-100 | B:54-100 | C:54-100 | D...)
Exon 1.3a (A:100-149 (gaps) | B:100-149 (gaps...)
Exon 1.4b (A:149-171 | B:149-171 | C:149-171 ...)
Exon 1.5 (A:171-186 | B:171-186 | C:171-186 ...)
Exon 1.6 (A:187-223 | B:187-223 | C:187-223 ...)
Exon 1.7b (A:224-257 | B:224-257 | C:224-257 ...)
Exon 1.8a (A:258-301 | B:258-301 | C:258-301 ...)
Exon 1.9a (A:301-361 (gaps) | B:301-361 (gaps...)
Exon 1.10a (A:361-390 | B:361-390 | C:361-390 ...)
Exon 1.11 (A:390-414 | B:390-414 | C:390-414 ...)
Exon 1.12a (A:415-473 | B:415-473 | C:415-473 ...)
Exon 1.13b (A:473-503 | B:473-503 | C:473-503 ...)
Exon 1.14a (A:503-538 | B:503-538 | C:503-538 ...)
Exon 1.15c (A:538-554 | B:538-554 | C:538-554 ...)
View:
Select:
Label:
All Exon Boundaries
01: Boundary -/1.2a
02: Boundary 1.2a/1.3a
03: Boundary 1.3a/1.4b
04: Boundary 1.4b/1.5
05: Boundary 1.5/1.6
06: Boundary 1.6/1.7b
07: Boundary 1.7b/1.8a
08: Boundary 1.8a/1.9a
09: Boundary 1.9a/1.10a
10: Boundary 1.10a/1.11
11: Boundary 1.11/1.12a
12: Boundary 1.12a/1.13b
13: Boundary 1.13b/1.14a
14: Boundary 1.14a/1.15c
15: Boundary 1.15c/-
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.2a
ENST00000261416
2a
ENSE00001083771
chr5:
73980969-73981384
416
HEXB_HUMAN
1-100
100
6
A:54-100
B:54-100
C:54-100
D:54-100
E:54-100
F:54-100
47
47
47
47
47
47
1.3a
ENST00000261416
3a
ENSE00000753141
chr5:
73985153-73985298
146
HEXB_HUMAN
100-149
50
6
A:100-149 (gaps)
B:100-149 (gaps)
C:100-149 (gaps)
D:100-149 (gaps)
E:100-149 (gaps)
F:100-149 (gaps)
50
50
50
50
50
50
1.4b
ENST00000261416
4b
ENSE00000753143
chr5:
73989464-73989529
66
HEXB_HUMAN
149-171
23
6
A:149-171
B:149-171
C:149-171
D:149-171
E:149-171
F:149-171
23
23
23
23
23
23
1.5
ENST00000261416
5
ENSE00000459979
chr5:
73992518-73992564
47
HEXB_HUMAN
171-186
16
6
A:171-186
B:171-186
C:171-186
D:171-186
E:171-186
F:171-186
16
16
16
16
16
16
1.6
ENST00000261416
6
ENSE00000753190
chr5:
73992821-73992931
111
HEXB_HUMAN
187-223
37
6
A:187-223
B:187-223
C:187-223
D:187-223
E:187-223
F:187-223
37
37
37
37
37
37
1.7b
ENST00000261416
7b
ENSE00001031132
chr5:
74001044-74001145
102
HEXB_HUMAN
224-257
34
6
A:224-257
B:224-257
C:224-257
D:224-257
E:224-257
F:224-257
34
34
34
34
34
34
1.8a
ENST00000261416
8a
ENSE00001031135
chr5:
74009331-74009460
130
HEXB_HUMAN
258-301
44
6
A:258-301
B:258-301
C:258-301
D:258-301
E:258-301
F:258-301
44
44
44
44
44
44
1.9a
ENST00000261416
9a
ENSE00001031133
chr5:
74011335-74011515
181
HEXB_HUMAN
301-361
61
6
A:301-361 (gaps)
B:301-361 (gaps)
C:301-361 (gaps)
D:301-361 (gaps)
E:301-361 (gaps)
F:301-361 (gaps)
61
61
61
61
61
61
1.10a
ENST00000261416
10a
ENSE00001083763
chr5:
74012412-74012498
87
HEXB_HUMAN
361-390
30
6
A:361-390
B:361-390
C:361-390
D:361-390
E:361-390
F:361-390
30
30
30
30
30
30
1.11
ENST00000261416
11
ENSE00001083768
chr5:
74014116-74014188
73
HEXB_HUMAN
390-414
25
6
A:390-414
B:390-414
C:390-414
D:390-414
E:390-414
F:390-414
25
25
25
25
25
25
1.12a
ENST00000261416
12a
ENSE00001083759
chr5:
74014622-74014796
175
HEXB_HUMAN
415-473
59
6
A:415-473
B:415-473
C:415-473
D:415-473
E:415-473
F:415-473
59
59
59
59
59
59
1.13b
ENST00000261416
13b
ENSE00001263703
chr5:
74016253-74016343
91
HEXB_HUMAN
473-503
31
6
A:473-503
B:473-503
C:473-503
D:473-503
E:473-503
F:473-503
31
31
31
31
31
31
1.14a
ENST00000261416
14a
ENSE00001083760
chr5:
74016468-74016572
105
HEXB_HUMAN
503-538
36
6
A:503-538
B:503-538
C:503-538
D:503-538
E:503-538
F:503-538
36
36
36
36
36
36
1.15c
ENST00000261416
15c
ENSE00001171600
chr5:
74016943-74017113
171
HEXB_HUMAN
538-556
19
6
A:538-554
B:538-554
C:538-554
D:538-553
E:538-554
F:538-554
17
17
17
16
17
17
[
close EXON info
]
SCOP Domains
(2, 12)
Info
All SCOP Domains
1a: SCOP_d1o7aa2 (A:54-199)
1b: SCOP_d1o7ab2 (B:54-199)
1c: SCOP_d1o7ac2 (C:54-199)
1d: SCOP_d1o7ad2 (D:54-199)
1e: SCOP_d1o7ae2 (E:54-199)
1f: SCOP_d1o7af2 (F:54-199)
2a: SCOP_d1o7aa1 (A:200-554)
2b: SCOP_d1o7ab1 (B:200-554)
2c: SCOP_d1o7ac1 (C:200-554)
2d: SCOP_d1o7ad1 (D:200-553)
2e: SCOP_d1o7ae1 (E:200-554)
2f: SCOP_d1o7af1 (F:200-554)
View:
Select:
Label:
Classes
(
)
(
)
Folds
(
)
(
)
Superfamilies
(
)
(
)
Families
(
)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
Zincin-like
(701)
Superfamily
:
beta-N-acetylhexosaminidase-like domain
(54)
Family
:
beta-N-acetylhexosaminidase domain
(18)
Protein domain
:
beta-hexosaminidase B, N-terminal domain
(6)
Human (Homo sapiens) [TaxId: 9606]
(6)
1a
d1o7aa2
A:54-199
1b
d1o7ab2
B:54-199
1c
d1o7ac2
C:54-199
1d
d1o7ad2
D:54-199
1e
d1o7ae2
E:54-199
1f
d1o7af2
F:54-199
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
TIM beta/alpha-barrel
(3956)
Superfamily
:
(Trans)glycosidases
(1191)
Family
:
beta-N-acetylhexosaminidase catalytic domain
(22)
Protein domain
:
beta-hexosaminidase B
(6)
Human (Homo sapiens) [TaxId: 9606]
(6)
2a
d1o7aa1
A:200-554
2b
d1o7ab1
B:200-554
2c
d1o7ac1
C:200-554
2d
d1o7ad1
D:200-553
2e
d1o7ae1
E:200-554
2f
d1o7af1
F:200-554
[
close SCOP info
]
CATH Domains
(2, 12)
Info
all CATH domains
1a: CATH_1o7aA01 (A:55-197)
1b: CATH_1o7aB01 (B:55-197)
1c: CATH_1o7aC01 (C:55-197)
1d: CATH_1o7aD01 (D:55-197)
1e: CATH_1o7aE01 (E:55-197)
1f: CATH_1o7aF01 (F:55-197)
2a: CATH_1o7aA02 (A:198-552)
2b: CATH_1o7aB02 (B:198-552)
2c: CATH_1o7aC02 (C:198-552)
2d: CATH_1o7aD02 (D:198-552)
2e: CATH_1o7aE02 (E:198-552)
2f: CATH_1o7aF02 (F:198-552)
View:
Select:
Label:
Classes
(
)
(
)
Architectures
(
)
(
)
Topologies
(
)
(
)
Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
2-Layer Sandwich
(8480)
Topology
:
Chitobiase; domain 2
(28)
Homologous Superfamily
:
Chitobiase, domain 2
(28)
Human (Homo sapiens)
(6)
1a
1o7aA01
A:55-197
1b
1o7aB01
B:55-197
1c
1o7aC01
C:55-197
1d
1o7aD01
D:55-197
1e
1o7aE01
E:55-197
1f
1o7aF01
F:55-197
Architecture
:
Alpha-Beta Barrel
(2994)
Topology
:
TIM Barrel
(2806)
Homologous Superfamily
:
Glycosidases
(843)
Human (Homo sapiens)
(94)
2a
1o7aA02
A:198-552
2b
1o7aB02
B:198-552
2c
1o7aC02
C:198-552
2d
1o7aD02
D:198-552
2e
1o7aE02
E:198-552
2f
1o7aF02
F:198-552
[
close CATH info
]
Pfam Domains
(2, 12)
Info
all PFAM domains
1a: PFAM_Glyco_hydro_20_1o7aF01 (F:200-517)
1b: PFAM_Glyco_hydro_20_1o7aF02 (F:200-517)
1c: PFAM_Glyco_hydro_20_1o7aF03 (F:200-517)
1d: PFAM_Glyco_hydro_20_1o7aF04 (F:200-517)
1e: PFAM_Glyco_hydro_20_1o7aF05 (F:200-517)
1f: PFAM_Glyco_hydro_20_1o7aF06 (F:200-517)
2a: PFAM_Glyco_hydro_20b_1o7aF07 (F:68-198)
2b: PFAM_Glyco_hydro_20b_1o7aF08 (F:68-198)
2c: PFAM_Glyco_hydro_20b_1o7aF09 (F:68-198)
2d: PFAM_Glyco_hydro_20b_1o7aF10 (F:68-198)
2e: PFAM_Glyco_hydro_20b_1o7aF11 (F:68-198)
2f: PFAM_Glyco_hydro_20b_1o7aF12 (F:68-198)
View:
Select:
Label:
Clans
(
)
(
)
Families
(
)
(
)
Organisms
(
)
(
)
Clan
:
Glyco_hydro_tim
(488)
Family
:
Glyco_hydro_20
(9)
Homo sapiens (Human)
(4)
1a
Glyco_hydro_20-1o7aF01
F:200-517
1b
Glyco_hydro_20-1o7aF02
F:200-517
1c
Glyco_hydro_20-1o7aF03
F:200-517
1d
Glyco_hydro_20-1o7aF04
F:200-517
1e
Glyco_hydro_20-1o7aF05
F:200-517
1f
Glyco_hydro_20-1o7aF06
F:200-517
Clan
:
no clan defined [family: Glyco_hydro_20b]
(22)
Family
:
Glyco_hydro_20b
(22)
Homo sapiens (Human)
(4)
2a
Glyco_hydro_20b-1o7aF07
F:68-198
2b
Glyco_hydro_20b-1o7aF08
F:68-198
2c
Glyco_hydro_20b-1o7aF09
F:68-198
2d
Glyco_hydro_20b-1o7aF10
F:68-198
2e
Glyco_hydro_20b-1o7aF11
F:68-198
2f
Glyco_hydro_20b-1o7aF12
F:68-198
[
close Pfam info
]
Atom Selection
(currently selected atoms:
all
)
Protein
Nucleic
Backbone
Sidechain
Hetero
Ligand
Solvent
All Atoms
Protein & NOT Variant
Protein & NOT Site
Protein & NOT PROSITE
Chain A
Chain B
Chain C
Chain D
Chain E
Chain F
Asymmetric Unit 1
Rendering
(selected part)
Molecule Coloring
(selected part)
by Chain (Asym. Unit)
by Chain (Biol. Unit)
by Secondary Structure
by Atom (CPK)
by SCOP Domain
by CATH Domain
by Pfam Domain
by Asymmetric Unit
by Exon
by Amino Acid
by Nucleotide
by Temperature
by Charge
by Rainbow (Group)
by Custom Color
Background Coloring
Choose
molecule
background
color...
[
close
]
RGB value
(e.g.: "#3cb371" or "60,179,113")
Stereo
Graphics Window
x
pixel
Miscellaneous
Script
Example Commands
Example Command
Action
select :A, :C
select chains 'A' and 'C'
select [ALA]:A
select all 'ALA' residues (Alanines) in chain 'A'
select 5-10
select residue range 5 to 10 in all chains
select 5-10:A
select residue range 5 to 10 in chain 'A'
select protein & not helix & not sheet
select non-helix/non-sheet protein parts
set fontsize 20
set label size to 20 (allowed range: 1-58)
ssbonds 100
show SS bonds with a radius of 100 units (=0.4Å)
wireframe 100
show bonds with a radius of 100 units (=0.4Å)
[
close Script example commands
]
Log
Note:
In this "Basic Interface" any change in the selection of a pulldown menu automatically triggers an action (one-step mechanism).
View and selection are coupled in the structure specific controls (e.g. "Hetero","PROSITE") .
Note:
In this "Advanced Interface" any change in the selection of a pulldown menu only sets the target for the corresponding control buttons (two-step mechanism).
View and selection are set independently in the structure specific controls (e.g. "Hetero","PROSITE") .
QuickSearch:
by PDB,NDB,UniProt,PROSITE Code or
Search Term(s)
Show PDB file:
Asym.Unit (539 KB)
Header - Asym.Unit
Biol.Unit 1 (182 KB)
Header - Biol.Unit 1
Biol.Unit 2 (180 KB)
Header - Biol.Unit 2
Biol.Unit 3 (97 KB)
Header - Biol.Unit 3
Biol.Unit 4 (182 KB)
Header - Biol.Unit 4
Plain Text
HTML (compressed size)
use JSmol [Javascript]
use Jmol [Java applet]
Upload:
Select a local file
OR
Enter a remote file address
You can upload any molecular structure file format that is recognized by Jmol,
e.g.: PDB, mmCif, CIF, CML, MOL, XYZ
(also compressed with 'gzip', see the
Jmol documentation
for a complete list)
JenaLib Atlas Page
|
Sequence/Alignment View
1O7A
Jmol Script Commands
|
Jmol Color Schemes
|
Jmol Mouse Manual
|
Jmol Wiki
controls:
collapse
expand
Home
JenaLib
Jmol Scripting
Contact
Help