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1O75
Asym. Unit
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Asym.Unit (148 KB)
Biol.Unit 1 (143 KB)
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(1)
Title
:
TP47, THE 47-KILODALTON LIPOPROTEIN OF TREPONEMA PALLIDUM
Authors
:
R. K. Deka, M. Machius, M. V. Norgard, D. R. Tomchick
Date
:
23 Oct 02 (Deposition) - 01 Nov 02 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.95
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A,B (1x)
Keywords
:
Lipoproteinullntigen, Penicillin-Binding Protein, Integral Membrane Lipoprotein, Immunogen, Four-Domain Protein, Antigen, Lipoprotein
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
R. K. Deka, M. Machius, M. V. Norgard, D. R. Tomchick
Crystal Structure Of The 47-Kda Lipoprotein Of Treponema Pallidum Reveals A Novel Penicillin-Binding Protein
J. Biol. Chem. V. 277 41857 2002
(for further references see the
PDB file header
)
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Hetero Components
(2, 7)
Info
All Hetero Components
1a: 2,3-DI-O-SULFO-ALPHA-D-GLUCOPYRANO... (PDXa)
1b: 2,3-DI-O-SULFO-ALPHA-D-GLUCOPYRANO... (PDXb)
2a: XENON (XEa)
2b: XENON (XEb)
2c: XENON (XEc)
2d: XENON (XEd)
2e: XENON (XEe)
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No.
Name
Count
Type
Full Name
1
PDX
2
Ligand/Ion
2,3-DI-O-SULFO-ALPHA-D-GLUCOPYRANOSE
2
XE
5
Ligand/Ion
XENON
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Sites
(6, 6)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
5: AC5 (SOFTWARE)
6: AC6 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
TYR A:260 , CYS A:296 , PHE A:331
BINDING SITE FOR RESIDUE XE A1415
2
AC2
SOFTWARE
LYS A:287 , GLY A:289 , ARG A:290 , VAL A:291 , HOH A:2309 , HOH A:2311 , MET B:234 , VAL B:291 , ARG B:293 , PDX B:1414
BINDING SITE FOR RESIDUE PDX A1417
3
AC3
SOFTWARE
VAL A:291 , PDX A:1417 , ARG B:88 , LYS B:287 , GLY B:289 , ARG B:290 , VAL B:291 , ARG B:293 , HOH B:2255 , HOH B:2308
BINDING SITE FOR RESIDUE PDX B1414
4
AC4
SOFTWARE
TYR B:260 , CYS B:296 , PHE B:331
BINDING SITE FOR RESIDUE XE B1415
5
AC5
SOFTWARE
GLU B:72 , MET B:104
BINDING SITE FOR RESIDUE XE B1416
6
AC6
SOFTWARE
VAL B:78 , LEU B:79 , TRP B:93
BINDING SITE FOR RESIDUE XE B1417
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SAPs(SNPs)/Variants
(0, 0)
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(mutated residues are not available)
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PROSITE Patterns/Profiles
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Exons
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(2, 6)
Info
All SCOP Domains
1a: SCOP_d1o75a1 (A:207-332)
1b: SCOP_d1o75a2 (A:333-414)
1c: SCOP_d1o75b1 (B:207-332)
1d: SCOP_d1o75b2 (B:333-413)
2a: SCOP_d1o75a3 (A:7-206)
2b: SCOP_d1o75b3 (B:7-206)
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Protein Domains
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(
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Organisms
(
)
(
)
Class
:
All beta proteins
(24004)
Fold
:
Immunoglobulin-like beta-sandwich
(7299)
Superfamily
:
Tp47 lipoprotein, middle and C-terminal domains
(1)
Family
:
Tp47 lipoprotein, middle and C-terminal domains
(1)
Protein domain
:
Tp47 lipoprotein, middle and C-terminal domains
(1)
Treponema pallidum [TaxId: 160]
(1)
1a
d1o75a1
A:207-332
1b
d1o75a2
A:333-414
1c
d1o75b1
B:207-332
1d
d1o75b2
B:333-413
Fold
:
Tp47 lipoprotein, N-terminal domain
(1)
Superfamily
:
Tp47 lipoprotein, N-terminal domain
(1)
Family
:
Tp47 lipoprotein, N-terminal domain
(1)
Protein domain
:
Tp47 lipoprotein, N-terminal domain
(1)
Treponema pallidum [TaxId: 160]
(1)
2a
d1o75a3
A:7-206
2b
d1o75b3
B:7-206
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CATH Domains
(2, 4)
Info
all CATH domains
1a: CATH_1o75A04 (A:333-414)
1b: CATH_1o75B04 (B:333-413)
2a: CATH_1o75A03 (A:205-332)
2b: CATH_1o75B03 (B:205-332)
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Organisms
(
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(
)
Class
:
Mainly Beta
(13760)
Architecture
:
Sandwich
(5577)
Topology
:
Immunoglobulin-like
(3897)
Homologous Superfamily
:
[code=2.60.40.1270, no name defined]
(1)
Treponema pallidum. Organism_taxid: 160.
(1)
1a
1o75A04
A:333-414
1b
1o75B04
B:333-413
Homologous Superfamily
:
[code=2.60.40.1300, no name defined]
(1)
Treponema pallidum. Organism_taxid: 160.
(1)
2a
1o75A03
A:205-332
2b
1o75B03
B:205-332
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Pfam Domains
(0, 0)
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Asymmetric Unit 1
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