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1O6V
Asym. Unit
Info
Asym.Unit (223 KB)
Biol.Unit 1 (112 KB)
Biol.Unit 2 (109 KB)
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(1)
Title
:
INTERNALIN (INLA,LISTERIA MONOCYTOGENES) - FUNCTIONAL DOMAIN, UNCOMPLEXED
Authors
:
W. -D. Schubert, C. Urbanke, T. Ziehm, V. Beier, M. P. Machner, E. Domann J. Wehland, T. Chakraborty, D. W. Heinz
Date
:
16 Oct 02 (Deposition) - 23 Dec 02 (Release) - 01 Aug 12 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.50
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Keywords
:
Cell Adhesion, Bacterial Infection, Extracellular Recognition, Cell Wall Attached, Leucine Rich Repeat
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
W. -D. Schubert, C. Urbanke, T. Ziehm, V. Beier, M. P. Machner, E. Domann, J. Wehland, T. Chakraborty, D. W. Heinz
Structure Of Internalin, A Major Invasion Protein Of Listeria Monocytogenes, In Complex With Its Human Receptor E-Cadherin
Cell(Cambridge, Mass. ) V. 111 825 2002
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Hetero Components
(1, 2)
Info
All Hetero Components
1a: CALCIUM ION (CAa)
1b: CALCIUM ION (CAb)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
CA
2
Ligand/Ion
CALCIUM ION
[
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Sites
(2, 2)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
GLU A:299 , HOH A:2468 , HOH A:2500
BINDING SITE FOR RESIDUE CA A1497
2
AC2
SOFTWARE
GLU B:299 , HOH B:2449 , HOH B:2479
BINDING SITE FOR RESIDUE CA B1497
[
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]
SAPs(SNPs)/Variants
(16, 31)
Info
(mutated residues are not available)
All SNPs/Variants
01: VAR_INLA_LISMO_002 (L33L, chain A, )
02: VAR_INLA_LISMO_003 (T51A, chain A/B, )
03: VAR_INLA_LISMO_004 (V94L, chain A/B, )
04: VAR_INLA_LISMO_005 (N118D, chain A/B, )
05: VAR_INLA_LISMO_006 (T142S, chain A/B, )
06: VAR_INLA_LISMO_007 (S187N, chain A/B, )
07: VAR_INLA_LISMO_008 (F193L, chain A/B, )
08: VAR_INLA_LISMO_009 (L253W, chain A/B, )
09: VAR_INLA_LISMO_010 (S292P, chain A/B, )
10: VAR_INLA_LISMO_011 (S292R, chain A/B, )
11: VAR_INLA_LISMO_012 (N321S, chain A/B, )
12: VAR_INLA_LISMO_013 (N381S, chain A/B, )
13: VAR_INLA_LISMO_014 (A416E, chain A/B, )
14: VAR_INLA_LISMO_015 (T454A, chain A/B, )
15: VAR_INLA_LISMO_016 (S474N, chain A/B, )
16: VAR_INLA_LISMO_017 (P476S, chain A/B, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
01
UniProt
VAR_INLA_LISMO_002
*
F
19
L
INLA_LISMO
---
---
A
L
33
L
02
UniProt
VAR_INLA_LISMO_003
*
T
51
A
INLA_LISMO
---
---
A/B
T
51
A
03
UniProt
VAR_INLA_LISMO_004
*
V
94
L
INLA_LISMO
---
---
A/B
V
94
L
04
UniProt
VAR_INLA_LISMO_005
*
N
118
D
INLA_LISMO
---
---
A/B
N
118
D
05
UniProt
VAR_INLA_LISMO_006
*
T
142
S
INLA_LISMO
---
---
A/B
T
142
S
06
UniProt
VAR_INLA_LISMO_007
*
S
187
N
INLA_LISMO
---
---
A/B
S
187
N
07
UniProt
VAR_INLA_LISMO_008
*
F
193
L
INLA_LISMO
---
---
A/B
F
193
L
08
UniProt
VAR_INLA_LISMO_009
*
L
253
W
INLA_LISMO
---
---
A/B
L
253
W
09
UniProt
VAR_INLA_LISMO_010
*
S
292
P
INLA_LISMO
---
---
A/B
S
292
P
10
UniProt
VAR_INLA_LISMO_011
*
S
292
R
INLA_LISMO
---
---
A/B
S
292
R
11
UniProt
VAR_INLA_LISMO_012
*
N
321
S
INLA_LISMO
---
---
A/B
N
321
S
12
UniProt
VAR_INLA_LISMO_013
*
N
381
S
INLA_LISMO
---
---
A/B
N
381
S
13
UniProt
VAR_INLA_LISMO_014
*
A
416
E
INLA_LISMO
---
---
A/B
A
416
E
14
UniProt
VAR_INLA_LISMO_015
*
T
454
A
INLA_LISMO
---
---
A/B
T
454
A
15
UniProt
VAR_INLA_LISMO_016
*
S
474
N
INLA_LISMO
---
---
A/B
S
474
N
16
UniProt
VAR_INLA_LISMO_017
*
P
476
S
INLA_LISMO
---
---
A/B
P
476
S
* ID not provided by source
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
[
close SNP/Variant info
]
PROSITE Patterns/Profiles
(1, 32)
Info
All PROSITE Patterns/Profiles
1: LRR (A:99-120,B:99-120|A:77-98,B:77-98|...)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
LRR
PS51450
Leucine-rich repeat profile.
INLA_LISM4
99-120
77-98
121-142
143-164
165-186
187-207
208-229
230-251
252-273
274-295
296-317
318-339
340-361
362-383
384-405
30
A:99-120
B:99-120
A:77-98
B:77-98
A:121-142
B:121-142
A:143-164
B:143-164
A:165-186
B:165-186
A:188-207
B:188-207
A:208-229
B:208-229
A:230-251
B:230-251
A:252-273
B:252-273
A:274-295
B:274-295
A:296-317
B:296-317
A:318-339
B:318-339
A:340-361
B:340-361
A:362-383
B:362-383
A:384-405
B:384-405
INLA_LISMO
99-120
121-142
143-164
165-186
187-207
208-229
230-251
252-273
274-295
296-317
318-339
340-361
362-383
384-405
28
A:99-120
B:99-120
A:121-142
B:121-142
A:143-164
B:143-164
A:165-186
B:165-186
A:187-207
B:187-207
A:208-229
B:208-229
A:230-251
B:230-251
A:252-273
B:252-273
A:274-295
B:274-295
A:296-317
B:296-317
A:318-339
B:318-339
A:340-361
B:340-361
A:362-383
B:362-383
A:384-405
B:384-405
[
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Exons
(0, 0)
Info
All Exons
View:
Select:
Label:
All Exon Boundaries
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(2, 4)
Info
All SCOP Domains
1a: SCOP_d1o6va1 (A:417-496)
1b: SCOP_d1o6vb1 (B:417-496)
2a: SCOP_d1o6va2 (A:33-416)
2b: SCOP_d1o6vb2 (B:36-416)
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Classes
(
)
(
)
Folds
(
)
(
)
Superfamilies
(
)
(
)
Families
(
)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All beta proteins
(24004)
Fold
:
Immunoglobulin-like beta-sandwich
(7299)
Superfamily
:
E set domains
(509)
Family
:
Internalin Ig-like domain
(13)
Protein domain
:
Internalin A
(10)
Listeria monocytogenes [TaxId: 1639]
(10)
1a
d1o6va1
A:417-496
1b
d1o6vb1
B:417-496
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
(112)
Superfamily
:
L domain-like
(93)
Family
:
Internalin LRR domain
(22)
Protein domain
:
Internalin A
(10)
Listeria monocytogenes [TaxId: 1639]
(10)
2a
d1o6va2
A:33-416
2b
d1o6vb2
B:36-416
[
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CATH Domains
(2, 4)
Info
all CATH domains
1a: CATH_1o6vB01 (B:36-414)
1b: CATH_1o6vA01 (A:33-414)
2a: CATH_1o6vA02 (A:415-496)
2b: CATH_1o6vB02 (B:415-496)
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Classes
(
)
(
)
Architectures
(
)
(
)
Topologies
(
)
(
)
Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
Alpha-Beta Horseshoe
(92)
Topology
:
Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
(73)
Homologous Superfamily
:
Ribonuclease Inhibitor
(73)
Listeria monocytogenes. Organism_taxid: 169963. Strain: egd-e. Variant: serovar 1/2a.
(3)
1a
1o6vB01
B:36-414
1b
1o6vA01
A:33-414
Class
:
Mainly Beta
(13760)
Architecture
:
Sandwich
(5577)
Topology
:
Immunoglobulin-like
(3897)
Homologous Superfamily
:
[code=2.60.40.1220, no name defined]
(28)
Listeria monocytogenes. Organism_taxid: 169963. Strain: egd-e. Variant: serovar 1/2a.
(3)
2a
1o6vA02
A:415-496
2b
1o6vB02
B:415-496
[
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]
Pfam Domains
(3, 26)
Info
all PFAM domains
1a: PFAM_LRR_4_1o6vB01 (B:360-403)
1b: PFAM_LRR_4_1o6vB02 (B:360-403)
1c: PFAM_LRR_4_1o6vB03 (B:360-403)
1d: PFAM_LRR_4_1o6vB04 (B:360-403)
1e: PFAM_LRR_4_1o6vB05 (B:360-403)
1f: PFAM_LRR_4_1o6vB06 (B:360-403)
1g: PFAM_LRR_4_1o6vB07 (B:360-403)
1h: PFAM_LRR_4_1o6vB08 (B:360-403)
1i: PFAM_LRR_4_1o6vB09 (B:360-403)
1j: PFAM_LRR_4_1o6vB10 (B:360-403)
1k: PFAM_LRR_4_1o6vB11 (B:360-403)
1l: PFAM_LRR_4_1o6vB12 (B:360-403)
1m: PFAM_LRR_4_1o6vB13 (B:360-403)
1n: PFAM_LRR_4_1o6vB14 (B:360-403)
1o: PFAM_LRR_4_1o6vB15 (B:360-403)
1p: PFAM_LRR_4_1o6vB16 (B:360-403)
1q: PFAM_LRR_4_1o6vB17 (B:360-403)
1r: PFAM_LRR_4_1o6vB18 (B:360-403)
1s: PFAM_LRR_4_1o6vB19 (B:360-403)
1t: PFAM_LRR_4_1o6vB20 (B:360-403)
1u: PFAM_LRR_4_1o6vB21 (B:360-403)
1v: PFAM_LRR_4_1o6vB22 (B:360-403)
2a: PFAM_Internalin_N_1o6vB23 (B:36-59)
2b: PFAM_Internalin_N_1o6vB24 (B:36-59)
3a: PFAM_LRR_adjacent_1o6vB25 (B:439-496)
3b: PFAM_LRR_adjacent_1o6vB26 (B:439-496)
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Clans
(
)
(
)
Families
(
)
(
)
Organisms
(
)
(
)
Clan
:
LRR
(77)
Family
:
LRR_4
(28)
Listeria monocytogenes
(18)
1a
LRR_4-1o6vB01
B:360-403
1b
LRR_4-1o6vB02
B:360-403
1c
LRR_4-1o6vB03
B:360-403
1d
LRR_4-1o6vB04
B:360-403
1e
LRR_4-1o6vB05
B:360-403
1f
LRR_4-1o6vB06
B:360-403
1g
LRR_4-1o6vB07
B:360-403
1h
LRR_4-1o6vB08
B:360-403
1i
LRR_4-1o6vB09
B:360-403
1j
LRR_4-1o6vB10
B:360-403
1k
LRR_4-1o6vB11
B:360-403
1l
LRR_4-1o6vB12
B:360-403
1m
LRR_4-1o6vB13
B:360-403
1n
LRR_4-1o6vB14
B:360-403
1o
LRR_4-1o6vB15
B:360-403
1p
LRR_4-1o6vB16
B:360-403
1q
LRR_4-1o6vB17
B:360-403
1r
LRR_4-1o6vB18
B:360-403
1s
LRR_4-1o6vB19
B:360-403
1t
LRR_4-1o6vB20
B:360-403
1u
LRR_4-1o6vB21
B:360-403
1v
LRR_4-1o6vB22
B:360-403
Clan
:
no clan defined [family: Internalin_N]
(18)
Family
:
Internalin_N
(18)
Listeria monocytogenes
(18)
2a
Internalin_N-1o6vB23
B:36-59
2b
Internalin_N-1o6vB24
B:36-59
Clan
:
no clan defined [family: LRR_adjacent]
(15)
Family
:
LRR_adjacent
(15)
Listeria monocytogenes
(15)
3a
LRR_adjacent-1o6vB25
B:439-496
3b
LRR_adjacent-1o6vB26
B:439-496
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Asym.Unit (223 KB)
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