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1O62
Asym. Unit
Info
Asym.Unit (132 KB)
Biol.Unit 1 (128 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF THE APO FORM OF A PLP-DEPENDENT ENZYME
Authors
:
Structural Genomix
Date
:
23 Oct 03 (Deposition) - 11 Nov 03 (Release) - 24 Jun 15 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.10
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A,B (1x)
Keywords
:
Structural Genomics, Unknown Function
(Keyword Search:
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Gene Ontology, PubMed, Web (Google)
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Reference
:
J. Badger, J. M. Sauder, J. M. Adams, S. Antonysamy, K. Bain, M. G. Bergseid, S. G. Buchanan, M. D. Buchanan, Y. Batiyenko, J. A. Christopher, S. Emtage, A. Eroshkina, I. Feil, E. B. Furlong, K. S. Gajiwala, X. Gao, D. He, J. Hendle, A. Huber, K. Hoda, P. Kearins, C. Kissinger, B. Laubert, H. A. Lewis, J. Lin, K. Loomis, D. Lorimer, G. Louie, M. Maletic, C. D. Marsh, I. Miller, J. Molinari, H. J. Muller-Dieckmann, J. M. Newman, B. W. Noland, B. Pagarigan, F. Park, T. S. Peat, K. W. Post, S. Radojicic, A. Ramos, R. Romero, M. E. Rutter, W. E. Sanderson, K. D. Schwinn, J. Tresser, J. Winhoven, T. A. Wright, L. Wu, J. Xu, T. J. Harris
Structural Analysis Of A Set Of Proteins Resulting From A Bacterial Genomics Project.
Proteins V. 60 787 2005
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Hetero Components
(2, 9)
Info
All Hetero Components
1a: ACETATE ION (ACTa)
1b: ACETATE ION (ACTb)
1c: ACETATE ION (ACTc)
2a: BETA-MERCAPTOETHANOL (BMEa)
2b: BETA-MERCAPTOETHANOL (BMEb)
2c: BETA-MERCAPTOETHANOL (BMEc)
2d: BETA-MERCAPTOETHANOL (BMEd)
2e: BETA-MERCAPTOETHANOL (BMEe)
2f: BETA-MERCAPTOETHANOL (BMEf)
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No.
Name
Count
Type
Full Name
1
ACT
3
Ligand/Ion
ACETATE ION
2
BME
6
Ligand/Ion
BETA-MERCAPTOETHANOL
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Sites
(9, 9)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
5: AC5 (SOFTWARE)
6: AC6 (SOFTWARE)
7: AC7 (SOFTWARE)
8: AC8 (SOFTWARE)
9: AC9 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
ARG B:65 , LYS B:204 , TYR B:208 , HOH B:431 , HOH B:464
BINDING SITE FOR RESIDUE ACT B 395
2
AC2
SOFTWARE
HIS A:61 , TYR A:91 , LEU A:92 , TYR A:224 , TYR A:226 , TYR B:91 , ACT B:396 , HOH B:523
BINDING SITE FOR RESIDUE ACT A 395
3
AC3
SOFTWARE
TYR A:91 , ACT A:395 , HOH A:550 , HIS B:61 , TYR B:91 , LEU B:92 , TYR B:224 , TYR B:226
BINDING SITE FOR RESIDUE ACT B 396
4
AC4
SOFTWARE
CYS A:90 , VAL A:340
BINDING SITE FOR RESIDUE BME A 401
5
AC5
SOFTWARE
CYS A:119 , LYS A:121
BINDING SITE FOR RESIDUE BME A 402
6
AC6
SOFTWARE
CYS A:361 , LEU A:362 , HOH A:510
BINDING SITE FOR RESIDUE BME A 403
7
AC7
SOFTWARE
CYS B:90 , VAL B:340
BINDING SITE FOR RESIDUE BME B 401
8
AC8
SOFTWARE
LYS A:306 , CYS B:297 , GLN B:298 , LYS B:299
BINDING SITE FOR RESIDUE BME B 402
9
AC9
SOFTWARE
ARG B:329 , CYS B:361 , LEU B:362 , HOH B:498
BINDING SITE FOR RESIDUE BME B 403
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SAPs(SNPs)/Variants
(0, 0)
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(mutated residues are not available)
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PROSITE Patterns/Profiles
(0, 0)
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Exons
(0, 0)
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(1, 2)
Info
All SCOP Domains
1a: SCOP_d1o62a_ (A:)
1b: SCOP_d1o62b_ (B:)
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Protein Domains
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)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
PLP-dependent transferase-like
(627)
Superfamily
:
PLP-dependent transferases
(625)
Family
:
GABA-aminotransferase-like
(167)
Protein domain
:
Aminotransferase homolog WlaK (PglE, Cj1121c)
(3)
Campylobacter jejuni [TaxId: 197]
(3)
1a
d1o62a_
A:
1b
d1o62b_
B:
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CATH Domains
(2, 4)
Info
all CATH domains
1a: CATH_1o62A01 (A:12-244)
1b: CATH_1o62B01 (B:12-244)
2a: CATH_1o62A02 (A:245-385)
2b: CATH_1o62B02 (B:245-385)
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)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
3-Layer(aba) Sandwich
(12045)
Topology
:
Aspartate Aminotransferase; domain 2
(384)
Homologous Superfamily
:
Type I PLP-dependent aspartate aminotransferase-like (Major domain)
(384)
Campylobacter jejuni. Organism_taxid: 197.
(3)
1a
1o62A01
A:12-244
1b
1o62B01
B:12-244
Architecture
:
Alpha-Beta Complex
(3881)
Topology
:
Aspartate Aminotransferase, domain 1
(355)
Homologous Superfamily
:
Aspartate Aminotransferase, domain 1
(354)
Campylobacter jejuni. Organism_taxid: 197.
(3)
2a
1o62A02
A:245-385
2b
1o62B02
B:245-385
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Pfam Domains
(0, 0)
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Asymmetric Unit 1
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Asym.Unit (132 KB)
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