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1O5O
Asym. Unit
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Asym.Unit (151 KB)
Biol.Unit 1 (142 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF URACIL PHOSPHORIBOSYLTRANSFERASE (TM0721) FROM THERMOTOGA MARITIMA AT 2.30 A RESOLUTION
Authors
:
Joint Center For Structural Genomics (Jcsg)
Date
:
03 Oct 03 (Deposition) - 14 Oct 03 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.30
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A,B,C,D (1x)
Keywords
:
Tm0721, Uracil Phosphoribosyltransferase, Structural Genomics, Jcsg, Psi, Protein Structure Initiative, Joint Center For Structural Genomics, Transferase
(Keyword Search:
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Gene Ontology, PubMed, Web (Google)
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Reference
:
Joint Center For Structural Genomics (Jcsg)
Crystal Structure Of Uracil Phosphoribosyltransferase (Tm0721) From Thermotoga Maritima At 2. 30 A Resolution
To Be Published
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Hetero Components
(2, 13)
Info
All Hetero Components
1a: SULFATE ION (SO4a)
1b: SULFATE ION (SO4b)
1c: SULFATE ION (SO4c)
1d: SULFATE ION (SO4d)
1e: SULFATE ION (SO4e)
1f: SULFATE ION (SO4f)
1g: SULFATE ION (SO4g)
1h: SULFATE ION (SO4h)
1i: SULFATE ION (SO4i)
2a: URIDINE-5'-MONOPHOSPHATE (U5Pa)
2b: URIDINE-5'-MONOPHOSPHATE (U5Pb)
2c: URIDINE-5'-MONOPHOSPHATE (U5Pc)
2d: URIDINE-5'-MONOPHOSPHATE (U5Pd)
View:
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Label:
No.
Name
Count
Type
Full Name
1
SO4
9
Ligand/Ion
SULFATE ION
2
U5P
4
Ligand/Ion
URIDINE-5'-MONOPHOSPHATE
[
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Sites
(13, 13)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
View:
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No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
LEU A:78 , ARG A:79 , ALA A:80 , ILE A:102 , U5P A:600 , HOH A:753 , HOH A:754 , HOH A:756 , HOH A:757 , TYR D:115
BINDING SITE FOR RESIDUE SO4 A 701
02
AC2
SOFTWARE
LEU B:78 , ARG B:79 , ALA B:80 , U5P B:601 , HOH B:768 , TYR C:115
BINDING SITE FOR RESIDUE SO4 B 702
03
AC3
SOFTWARE
TYR B:115 , LEU C:78 , ARG C:79 , ALA C:80 , U5P C:602 , HOH C:772 , HOH C:773 , HOH C:788
BINDING SITE FOR RESIDUE SO4 C 703
04
AC4
SOFTWARE
TYR A:115 , ARG D:79 , ALA D:80 , U5P D:603 , HOH D:794
BINDING SITE FOR RESIDUE SO4 D 704
05
AC5
SOFTWARE
ARG A:187 , ASN A:189 , ASP A:190 , HOH A:710
BINDING SITE FOR RESIDUE SO4 A 705
06
AC6
SOFTWARE
ARG B:187 , ASN B:189 , ASP B:190
BINDING SITE FOR RESIDUE SO4 B 706
07
AC7
SOFTWARE
ARG D:187 , ASN D:189 , ASP D:190
BINDING SITE FOR RESIDUE SO4 D 708
08
AC8
SOFTWARE
GLY A:25 , PRO A:26 , ARG A:207 , HOH A:748 , HOH A:759 , LYS D:70
BINDING SITE FOR RESIDUE SO4 A 709
09
AC9
SOFTWARE
LYS A:70 , GLY D:25 , PRO D:26 , ARG D:207 , HOH D:729
BINDING SITE FOR RESIDUE SO4 D 710
10
BC1
SOFTWARE
ARG A:104 , MET A:133 , ALA A:135 , THR A:136 , GLY A:137 , VAL A:138 , SER A:139 , GLY A:192 , TYR A:193 , ILE A:194 , GLY A:199 , ASP A:200 , ALA A:201 , SO4 A:701 , HOH A:712 , HOH A:737 , HOH A:754 , HOH A:755 , HOH A:756
BINDING SITE FOR RESIDUE U5P A 600
11
BC2
SOFTWARE
ARG B:104 , ASP B:131 , MET B:133 , ALA B:135 , THR B:136 , GLY B:137 , VAL B:138 , SER B:139 , GLY B:192 , TYR B:193 , ILE B:194 , GLY B:199 , ALA B:201 , SO4 B:702 , HOH B:707 , HOH B:724 , HOH B:768 , HOH B:774
BINDING SITE FOR RESIDUE U5P B 601
12
BC3
SOFTWARE
ARG C:104 , MET C:133 , ALA C:135 , THR C:136 , GLY C:137 , VAL C:138 , SER C:139 , GLY C:192 , TYR C:193 , ILE C:194 , GLY C:199 , ASP C:200 , ALA C:201 , SO4 C:703 , HOH C:705 , HOH C:707 , HOH C:710 , HOH C:774 , HOH C:788
BINDING SITE FOR RESIDUE U5P C 602
13
BC4
SOFTWARE
ARG D:104 , MET D:133 , ALA D:135 , THR D:136 , GLY D:137 , VAL D:138 , SER D:139 , GLY D:192 , TYR D:193 , ILE D:194 , GLY D:199 , ASP D:200 , ALA D:201 , SO4 D:704 , HOH D:719 , HOH D:733 , HOH D:794
BINDING SITE FOR RESIDUE U5P D 603
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
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PROSITE Patterns/Profiles
(0, 0)
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Exons
(0, 0)
Info
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(1, 4)
Info
All SCOP Domains
1a: SCOP_d1o5oa_ (A:)
1b: SCOP_d1o5ob_ (B:)
1c: SCOP_d1o5oc_ (C:)
1d: SCOP_d1o5od_ (D:)
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Protein Domains
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(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
PRTase-like
(145)
Superfamily
:
PRTase-like
(145)
Family
:
Phosphoribosyltransferases (PRTases)
(100)
Protein domain
:
Uracil PRTase, Upp
(14)
Thermotoga maritima [TaxId: 2336]
(1)
1a
d1o5oa_
A:
1b
d1o5ob_
B:
1c
d1o5oc_
C:
1d
d1o5od_
D:
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CATH Domains
(1, 4)
Info
all CATH domains
1a: CATH_1o5oB00 (B:1-209)
1b: CATH_1o5oA00 (A:0-209)
1c: CATH_1o5oC00 (C:0-209)
1d: CATH_1o5oD00 (D:0-209)
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Organisms
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Class
:
Alpha Beta
(26913)
Architecture
:
3-Layer(aba) Sandwich
(12045)
Topology
:
Rossmann fold
(7312)
Homologous Superfamily
:
[code=3.40.50.2020, no name defined]
(117)
Thermotoga maritima. Organism_taxid: 2336.
(1)
1a
1o5oB00
B:1-209
1b
1o5oA00
A:0-209
1c
1o5oC00
C:0-209
1d
1o5oD00
D:0-209
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Pfam Domains
(1, 4)
Info
all PFAM domains
1a: PFAM_Pribosyltran_1o5oD01 (D:57-161)
1b: PFAM_Pribosyltran_1o5oD02 (D:57-161)
1c: PFAM_Pribosyltran_1o5oD03 (D:57-161)
1d: PFAM_Pribosyltran_1o5oD04 (D:57-161)
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Clan
:
PRTase-like
(59)
Family
:
Pribosyltran
(59)
Thermotoga maritima
(1)
1a
Pribosyltran-1o5oD01
D:57-161
1b
Pribosyltran-1o5oD02
D:57-161
1c
Pribosyltran-1o5oD03
D:57-161
1d
Pribosyltran-1o5oD04
D:57-161
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Asymmetric Unit 1
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